Gene annotation
Transcriptome id Sobic.003G217400.1
Synonym Sb03g027630
Functional annotation zinc finger, C3HC4 type family protein, expressed
UniProt C5XQY9
Pfam PF12906
Panther DB PTHR23012:SF54 PTHR23012
NCBI CDD KOG1609; Protein involved in mRNA turnover and stability
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G11020 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os01g42500.1 : zinc finger, C3HC4 type family protein, expressed
MaizeGDB (Corn) Zm00025a028691
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G261500 lipase, putative, expressed -
2 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
3 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
4 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
5 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
6 Sobic.010G000900 spotted leaf 11, putative, expressed -
7 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
8 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
9 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
10 Sobic.004G348900 expressed protein -
11 Sobic.004G272300 expressed protein -
12 Sobic.002G251700 no apical meristem protein, putative, expressed -
13 Sobic.003G261400 DUF292 domain containing protein, expressed -
14 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
15 Sobic.001G078800 similar to Serine/threonine-protein kinase SAPK8(PubMedID : 29862293)@CAMK_CAMK_like.22 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
16 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
17 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
18 Sobic.001G175800 expressed protein -
19 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
20 Sobic.004G086600 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6


Gene co-expression network
sample Sobic003G217400 Sobic003G217400 Sobic003G261500 Sobic003G261500 Sobic003G217400--Sobic003G261500 Sobic003G077900 Sobic003G077900 Sobic003G217400--Sobic003G077900 Sobic009G004600 Sobic009G004600 Sobic003G217400--Sobic009G004600 Sobic002G400000 Sobic002G400000 Sobic003G217400--Sobic002G400000 Sobic001G314500 Sobic001G314500 Sobic003G217400--Sobic001G314500 Sobic010G000900 Sobic010G000900 Sobic003G217400--Sobic010G000900 Sobic009G198500 Sobic009G198500 Sobic003G217400--Sobic009G198500 Sobic001G051200 Sobic001G051200 Sobic003G217400--Sobic001G051200 Sobic007G168600 Sobic007G168600 Sobic003G217400--Sobic007G168600 Sobic003G261400 Sobic003G261400 Sobic003G261500--Sobic003G261400 Sobic003G261500--Sobic003G217400 Sobic003G261500--Sobic010G000900 Sobic001G283200 Sobic001G283200 Sobic003G261500--Sobic001G283200 Sobic003G261500--Sobic007G168600 Sobic003G261500--Sobic001G051200 Sobic004G212200 Sobic004G212200 Sobic003G261500--Sobic004G212200 Sobic003G124800 Sobic003G124800 Sobic003G261500--Sobic003G124800 Sobic004G086600 Sobic004G086600 Sobic003G261500--Sobic004G086600 Sobic003G077900--Sobic002G400000 Sobic003G077900--Sobic007G168600 Sobic003G077900--Sobic003G217400 Sobic010G188100 Sobic010G188100 Sobic003G077900--Sobic010G188100 Sobic004G060600 Sobic004G060600 Sobic003G077900--Sobic004G060600 Sobic001G220400 Sobic001G220400 Sobic003G077900--Sobic001G220400 Sobic004G348900 Sobic004G348900 Sobic003G077900--Sobic004G348900 Sobic009G219900 Sobic009G219900 Sobic003G077900--Sobic009G219900 Sobic004G130900 Sobic004G130900 Sobic003G077900--Sobic004G130900 Sobic009G004600--Sobic002G400000 Sobic004G356900 Sobic004G356900 Sobic009G004600--Sobic004G356900 Sobic009G004600--Sobic003G217400 Sobic009G004600--Sobic009G198500 Sobic001G263000 Sobic001G263000 Sobic009G004600--Sobic001G263000 Sobic009G004600--Sobic001G314500 Sobic002G113900 Sobic002G113900 Sobic009G004600--Sobic002G113900 Sobic010G205300 Sobic010G205300 Sobic009G004600--Sobic010G205300 Sobic009G004600--Sobic007G168600 Sobic002G400000--Sobic007G168600 Sobic002G400000--Sobic003G077900 Sobic002G400000--Sobic009G198500 Sobic002G400000--Sobic004G130900 Sobic001G433400 Sobic001G433400 Sobic002G400000--Sobic001G433400 Sobic001G395400 Sobic001G395400 Sobic002G400000--Sobic001G395400 Sobic004G327300 Sobic004G327300 Sobic002G400000--Sobic004G327300 Sobic002G400000--Sobic009G004600 Sobic002G400000--Sobic010G000900 Sobic006G212100 Sobic006G212100 Sobic001G314500--Sobic006G212100 Sobic001G314500--Sobic009G198500 Sobic001G314500--Sobic007G168600 Sobic001G388200 Sobic001G388200 Sobic001G314500--Sobic001G388200 Sobic006G232200 Sobic006G232200 Sobic001G314500--Sobic006G232200 Sobic001G054200 Sobic001G054200 Sobic001G314500--Sobic001G054200 Sobic001G314500--Sobic009G004600 Sobic001G314500--Sobic010G205300 Sobic001G314500--Sobic003G217400 Sobic010G000900--Sobic002G400000 Sobic003G012200 Sobic003G012200 Sobic010G000900--Sobic003G012200 Sobic001G047400 Sobic001G047400 Sobic010G000900--Sobic001G047400 Sobic010G000900--Sobic003G261400 Sobic010G000900--Sobic004G130900 Sobic010G000900--Sobic001G051200 Sobic001G323000 Sobic001G323000 Sobic010G000900--Sobic001G323000 Sobic010G000900--Sobic001G388200 Sobic001G085100 Sobic001G085100 Sobic010G000900--Sobic001G085100 Sobic004G272300 Sobic004G272300 Sobic009G198500--Sobic004G272300 Sobic009G198500--Sobic003G124800 Sobic009G198500--Sobic002G400000 Sobic009G198500--Sobic007G168600 Sobic002G078400 Sobic002G078400 Sobic009G198500--Sobic002G078400 Sobic004G300900 Sobic004G300900 Sobic009G198500--Sobic004G300900 Sobic001G005900 Sobic001G005900 Sobic009G198500--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic009G198500--Sobic007G096700 Sobic009G198500--Sobic006G212100 Sobic003G015900 Sobic003G015900 Sobic001G051200--Sobic003G015900 Sobic003G007500 Sobic003G007500 Sobic001G051200--Sobic003G007500 Sobic001G051200--Sobic003G261400 Sobic001G051200--Sobic001G047400 Sobic001G051200--Sobic010G000900 Sobic001G051200--Sobic007G168600 Sobic010G058500 Sobic010G058500 Sobic001G051200--Sobic010G058500 Sobic001G051200--Sobic002G400000 Sobic010G168600 Sobic010G168600 Sobic001G051200--Sobic010G168600 Sobic007G168600--Sobic002G400000 Sobic007G168600--Sobic009G198500 Sobic007G168600--Sobic004G086600 Sobic001G502200 Sobic001G502200 Sobic007G168600--Sobic001G502200 Sobic007G168600--Sobic003G077900 Sobic007G168600--Sobic010G205300 Sobic007G168600--Sobic003G124800 Sobic001G461900 Sobic001G461900 Sobic007G168600--Sobic001G461900 Sobic007G168600--Sobic001G314500
Octagon: transcription factors


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