Gene annotation
Transcriptome id Sobic.007G168600.3,Sobic.007G168600.2,Sobic.007G168600.1,Sobic.007G168600.4
Synonym ATVAMP727, VAMP727, Sb07g024140
Functional annotation vesicle-associated membrane protein 727, putative, expressed
UniProt A0A1B6PI73 , A0A1B6PI77
Pfam PF13774 PF00957
Panther DB PTHR21136 PTHR21136:SF73
NCBI CDD KOG0859; Synaptobrevin/VAMP-like protein
KEGG Orthology K08511; vesicle-associated membrane protein 72
Gene Ontology GO:0016192; vesicle-mediated transport GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G54300 : vesicle-associated membrane protein 727
RAP-DB (Rice) LOC_Os08g44430.2,LOC_Os08g44430.1 : vesicle-associated membrane protein 727, putative, expressed
MaizeGDB (Corn) Zm00025a005604
Brachypodium KQJ99364
Barley -
Wheat TraesCS7A02G279100 , TraesCS7B02G181100 , TraesCS7D02G278900
Populus -


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cDNA sequences
Sobic.007G168600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
2 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
3 Sobic.004G086600 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
4 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
5 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
6 Sobic.010G205300 secreted salivary protein, putative, expressed -
7 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
8 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
9 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
10 Sobic.003G261400 DUF292 domain containing protein, expressed -
11 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
12 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
13 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
14 Sobic.004G272300 expressed protein -
15 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
16 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
17 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
18 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
19 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
20 Sobic.009G174900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D


Gene co-expression network
sample Sobic007G168600 Sobic007G168600 Sobic002G400000 Sobic002G400000 Sobic007G168600--Sobic002G400000 Sobic009G198500 Sobic009G198500 Sobic007G168600--Sobic009G198500 Sobic004G086600 Sobic004G086600 Sobic007G168600--Sobic004G086600 Sobic001G502200 Sobic001G502200 Sobic007G168600--Sobic001G502200 Sobic003G077900 Sobic003G077900 Sobic007G168600--Sobic003G077900 Sobic010G205300 Sobic010G205300 Sobic007G168600--Sobic010G205300 Sobic003G124800 Sobic003G124800 Sobic007G168600--Sobic003G124800 Sobic001G461900 Sobic001G461900 Sobic007G168600--Sobic001G461900 Sobic001G314500 Sobic001G314500 Sobic007G168600--Sobic001G314500 Sobic002G400000--Sobic007G168600 Sobic002G400000--Sobic003G077900 Sobic002G400000--Sobic009G198500 Sobic004G130900 Sobic004G130900 Sobic002G400000--Sobic004G130900 Sobic001G433400 Sobic001G433400 Sobic002G400000--Sobic001G433400 Sobic001G395400 Sobic001G395400 Sobic002G400000--Sobic001G395400 Sobic004G327300 Sobic004G327300 Sobic002G400000--Sobic004G327300 Sobic009G004600 Sobic009G004600 Sobic002G400000--Sobic009G004600 Sobic010G000900 Sobic010G000900 Sobic002G400000--Sobic010G000900 Sobic004G272300 Sobic004G272300 Sobic009G198500--Sobic004G272300 Sobic009G198500--Sobic003G124800 Sobic009G198500--Sobic002G400000 Sobic009G198500--Sobic007G168600 Sobic002G078400 Sobic002G078400 Sobic009G198500--Sobic002G078400 Sobic004G300900 Sobic004G300900 Sobic009G198500--Sobic004G300900 Sobic001G005900 Sobic001G005900 Sobic009G198500--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic009G198500--Sobic007G096700 Sobic006G212100 Sobic006G212100 Sobic009G198500--Sobic006G212100 Sobic004G086600--Sobic007G168600 Sobic007G045600 Sobic007G045600 Sobic004G086600--Sobic007G045600 Sobic001G007200 Sobic001G007200 Sobic004G086600--Sobic001G007200 Sobic004G086600--Sobic001G502200 Sobic006G232200 Sobic006G232200 Sobic004G086600--Sobic006G232200 Sobic004G086600--Sobic001G461900 Sobic004G086600--Sobic003G124800 Sobic001G415500 Sobic001G415500 Sobic004G086600--Sobic001G415500 Sobic003G015900 Sobic003G015900 Sobic004G086600--Sobic003G015900 Sobic001G315500 Sobic001G315500 Sobic001G502200--Sobic001G315500 Sobic001G502200--Sobic007G168600 Sobic004G224900 Sobic004G224900 Sobic001G502200--Sobic004G224900 Sobic001G502200--Sobic003G124800 Sobic001G458700 Sobic001G458700 Sobic001G502200--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G502200--Sobic003G330500 Sobic002G428200 Sobic002G428200 Sobic001G502200--Sobic002G428200 Sobic001G502200--Sobic002G078400 Sobic006G252200 Sobic006G252200 Sobic001G502200--Sobic006G252200 Sobic003G077900--Sobic002G400000 Sobic003G077900--Sobic007G168600 Sobic003G217400 Sobic003G217400 Sobic003G077900--Sobic003G217400 Sobic010G188100 Sobic010G188100 Sobic003G077900--Sobic010G188100 Sobic004G060600 Sobic004G060600 Sobic003G077900--Sobic004G060600 Sobic001G220400 Sobic001G220400 Sobic003G077900--Sobic001G220400 Sobic004G348900 Sobic004G348900 Sobic003G077900--Sobic004G348900 Sobic009G219900 Sobic009G219900 Sobic003G077900--Sobic009G219900 Sobic003G077900--Sobic004G130900 Sobic004G232800 Sobic004G232800 Sobic010G205300--Sobic004G232800 Sobic003G349300 Sobic003G349300 Sobic010G205300--Sobic003G349300 Sobic010G205300--Sobic007G168600 Sobic010G205300--Sobic001G502200 Sobic002G281300 Sobic002G281300 Sobic010G205300--Sobic002G281300 Sobic004G356900 Sobic004G356900 Sobic010G205300--Sobic004G356900 Sobic003G261400 Sobic003G261400 Sobic010G205300--Sobic003G261400 Sobic004G194900 Sobic004G194900 Sobic010G205300--Sobic004G194900 Sobic001G067900 Sobic001G067900 Sobic010G205300--Sobic001G067900 Sobic003G124800--Sobic009G198500 Sobic001G439600 Sobic001G439600 Sobic003G124800--Sobic001G439600 Sobic003G124800--Sobic006G232200 Sobic003G124800--Sobic001G502200 Sobic003G124800--Sobic007G045600 Sobic001G529000 Sobic001G529000 Sobic003G124800--Sobic001G529000 Sobic003G124800--Sobic007G168600 Sobic006G150600 Sobic006G150600 Sobic003G124800--Sobic006G150600 Sobic004G066800 Sobic004G066800 Sobic003G124800--Sobic004G066800 Sobic009G135600 Sobic009G135600 Sobic001G461900--Sobic009G135600 Sobic001G461900--Sobic007G045600 Sobic009G146100 Sobic009G146100 Sobic001G461900--Sobic009G146100 Sobic001G461900--Sobic004G327300 Sobic007G142500 Sobic007G142500 Sobic001G461900--Sobic007G142500 Sobic001G461900--Sobic007G168600 Sobic001G461900--Sobic004G086600 Sobic004G335000 Sobic004G335000 Sobic001G461900--Sobic004G335000 Sobic001G461900--Sobic007G096700 Sobic001G314500--Sobic006G212100 Sobic001G314500--Sobic009G198500 Sobic001G314500--Sobic007G168600 Sobic001G388200 Sobic001G388200 Sobic001G314500--Sobic001G388200 Sobic001G314500--Sobic006G232200 Sobic001G054200 Sobic001G054200 Sobic001G314500--Sobic001G054200 Sobic001G314500--Sobic009G004600 Sobic001G314500--Sobic010G205300 Sobic001G314500--Sobic003G217400
Octagon: transcription factors


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