Gene annotation
Transcriptome id Sobic.009G174900.1
Synonym ATUBC11, UBC11, Sb09g023560
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt C5YZT9
Pfam PF05773
Panther DB PTHR24068
NCBI CDD KOG0417; Ubiquitin-protein ligase
KEGG Orthology K06689; UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G08690 : ubiquitin-conjugating enzyme 11
RAP-DB (Rice) LOC_Os01g60360.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a037795 , Zm00025a027071
Brachypodium KQJ85185 , KQK05734 , KQK05735 , KQK05736 , KQK05737 , KQK05732
Barley HORVU0Hr1G002220.1 , HORVU0Hr1G002220.2 , HORVU2Hr1G118270.2 , HORVU1Hr1G069530.2 , HORVU1Hr1G069530.3 , HORVU1Hr1G069530.1 , HORVU2Hr1G118270.1 , HORVU3Hr1G080790.1 , HORVU3Hr1G080790.3 , HORVU3Hr1G080790.2
Wheat TraesCS1B02G311400 , TraesCS3A02G342500 , TraesCS3A02G342500 , TraesCS1D02G301300 , TraesCS1A02G301600
Populus PNT13864 , PNT13865 , PNT13860 , PNT13861 , PNT13862 , PNT13863


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cDNA sequences
Sobic.009G174900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G337000 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
2 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
3 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
4 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
5 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
6 Sobic.006G212100 expressed protein -
7 Sobic.001G491100 structural constituent of ribosome, putative, expressed K02911: RP-L32, MRPL32, large subunit ribosomal protein L32
8 Sobic.002G134001 - K14490: histidine-containing phosphotransfer peotein
9 Sobic.001G054200 green ripe-like, putative, expressed -
10 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
11 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
12 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
13 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.009G005900 actin, putative, expressed K10355: actin, other eukaryote
15 Sobic.004G339200 CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed -
16 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
17 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
18 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
19 Sobic.002G129000 RING zinc finger protein, putative, expressed -
20 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other


Gene co-expression network
sample Sobic009G174900 Sobic009G174900 Sobic003G337000 Sobic003G337000 Sobic009G174900--Sobic003G337000 Sobic002G400000 Sobic002G400000 Sobic009G174900--Sobic002G400000 Sobic004G327300 Sobic004G327300 Sobic009G174900--Sobic004G327300 Sobic009G135600 Sobic009G135600 Sobic009G174900--Sobic009G135600 Sobic007G168600 Sobic007G168600 Sobic009G174900--Sobic007G168600 Sobic006G212100 Sobic006G212100 Sobic009G174900--Sobic006G212100 Sobic001G491100 Sobic001G491100 Sobic009G174900--Sobic001G491100 Sobic002G134001 Sobic002G134001 Sobic009G174900--Sobic002G134001 Sobic001G054200 Sobic001G054200 Sobic009G174900--Sobic001G054200 Sobic003G337000--Sobic009G174900 Sobic001G415500 Sobic001G415500 Sobic003G337000--Sobic001G415500 Sobic003G337000--Sobic001G054200 Sobic006G232200 Sobic006G232200 Sobic003G337000--Sobic006G232200 Sobic008G161800 Sobic008G161800 Sobic003G337000--Sobic008G161800 Sobic004G248800 Sobic004G248800 Sobic003G337000--Sobic004G248800 Sobic003G253000 Sobic003G253000 Sobic003G337000--Sobic003G253000 Sobic009G185800 Sobic009G185800 Sobic003G337000--Sobic009G185800 Sobic003G337000--Sobic009G135600 Sobic002G400000--Sobic007G168600 Sobic003G077900 Sobic003G077900 Sobic002G400000--Sobic003G077900 Sobic009G198500 Sobic009G198500 Sobic002G400000--Sobic009G198500 Sobic004G130900 Sobic004G130900 Sobic002G400000--Sobic004G130900 Sobic001G433400 Sobic001G433400 Sobic002G400000--Sobic001G433400 Sobic001G395400 Sobic001G395400 Sobic002G400000--Sobic001G395400 Sobic002G400000--Sobic004G327300 Sobic009G004600 Sobic009G004600 Sobic002G400000--Sobic009G004600 Sobic010G000900 Sobic010G000900 Sobic002G400000--Sobic010G000900 Sobic003G367451 Sobic003G367451 Sobic004G327300--Sobic003G367451 Sobic001G005900 Sobic001G005900 Sobic004G327300--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic004G327300--Sobic007G096700 Sobic004G327300--Sobic002G400000 Sobic004G327300--Sobic004G130900 Sobic001G461900 Sobic001G461900 Sobic004G327300--Sobic001G461900 Sobic004G327300--Sobic009G174900 Sobic004G327300--Sobic009G198500 Sobic007G114200 Sobic007G114200 Sobic004G327300--Sobic007G114200 Sobic009G135600--Sobic001G461900 Sobic003G349300 Sobic003G349300 Sobic009G135600--Sobic003G349300 Sobic009G146100 Sobic009G146100 Sobic009G135600--Sobic009G146100 Sobic009G135600--Sobic001G433400 Sobic002G385900 Sobic002G385900 Sobic009G135600--Sobic002G385900 Sobic001G388200 Sobic001G388200 Sobic009G135600--Sobic001G388200 Sobic009G135600--Sobic002G400000 Sobic001G294900 Sobic001G294900 Sobic009G135600--Sobic001G294900 Sobic009G135600--Sobic001G054200 Sobic007G168600--Sobic002G400000 Sobic007G168600--Sobic009G198500 Sobic004G086600 Sobic004G086600 Sobic007G168600--Sobic004G086600 Sobic001G502200 Sobic001G502200 Sobic007G168600--Sobic001G502200 Sobic007G168600--Sobic003G077900 Sobic010G205300 Sobic010G205300 Sobic007G168600--Sobic010G205300 Sobic003G124800 Sobic003G124800 Sobic007G168600--Sobic003G124800 Sobic007G168600--Sobic001G461900 Sobic001G314500 Sobic001G314500 Sobic007G168600--Sobic001G314500 Sobic006G212100--Sobic001G054200 Sobic006G212100--Sobic009G198500 Sobic006G212100--Sobic001G314500 Sobic006G263900 Sobic006G263900 Sobic006G212100--Sobic006G263900 Sobic006G212100--Sobic002G400000 Sobic006G212100--Sobic007G168600 Sobic006G212100--Sobic009G174900 Sobic010G083700 Sobic010G083700 Sobic006G212100--Sobic010G083700 Sobic006G212100--Sobic001G005900 Sobic001G491100--Sobic009G174900 Sobic007G019100 Sobic007G019100 Sobic001G491100--Sobic007G019100 Sobic001G481700 Sobic001G481700 Sobic001G491100--Sobic001G481700 Sobic001G025600 Sobic001G025600 Sobic001G491100--Sobic001G025600 Sobic003G196800 Sobic003G196800 Sobic001G491100--Sobic003G196800 Sobic002G078400 Sobic002G078400 Sobic001G491100--Sobic002G078400 Sobic009G004400 Sobic009G004400 Sobic001G491100--Sobic009G004400 Sobic001G491100--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic001G491100--Sobic008G137600 Sobic009G229200 Sobic009G229200 Sobic002G134001--Sobic009G229200 Sobic002G134001--Sobic009G174900 Sobic002G134001--Sobic003G337000 Sobic002G134001--Sobic006G212100 Sobic004G079100 Sobic004G079100 Sobic002G134001--Sobic004G079100 Sobic009G005900 Sobic009G005900 Sobic002G134001--Sobic009G005900 Sobic002G134001--Sobic001G433400 Sobic001G007200 Sobic001G007200 Sobic002G134001--Sobic001G007200 Sobic002G134001--Sobic002G400000 Sobic001G054200--Sobic010G083700 Sobic001G054200--Sobic006G263900 Sobic001G054200--Sobic006G212100 Sobic007G186300 Sobic007G186300 Sobic001G054200--Sobic007G186300 Sobic004G293700 Sobic004G293700 Sobic001G054200--Sobic004G293700 Sobic009G246950 Sobic009G246950 Sobic001G054200--Sobic009G246950 Sobic001G054200--Sobic004G079100 Sobic001G054200--Sobic006G232200 Sobic003G115800 Sobic003G115800 Sobic001G054200--Sobic003G115800
Octagon: transcription factors


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