Gene annotation
Transcriptome id Sobic.001G433400.1
Synonym Sb01g040770
Functional annotation Zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WQU9
Pfam PF13920
Panther DB PTHR22996
NCBI CDD KOG4265; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G09770 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g15000.1 : Zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052847 , Zm00025a043981 , Zm00025a001631 , Zm00025a056921
Brachypodium KQK22519
Barley HORVU0Hr1G008700.5 , HORVU0Hr1G008700.4 , HORVU0Hr1G008700.7 , HORVU0Hr1G008700.6 , HORVU0Hr1G008700.1 , HORVU0Hr1G008700.3 , HORVU0Hr1G008700.2
Wheat TraesCS4A02G083500 , TraesCS4D02G221000 , TraesCS4D02G221000 , TraesCS4B02G220700 , TraesCS4B02G220700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G433400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
2 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
3 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
4 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
5 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
6 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
7 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
8 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
9 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
10 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
11 Sobic.010G042100 transcription elongation factor 1, putative, expressed -
12 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
13 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
14 Sobic.004G339200 CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed -
15 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
16 Sobic.009G174900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
17 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
18 Sobic.002G261900 arabinogalactan protein, putative, expressed -
19 Sobic.010G253800 expressed protein -
20 Sobic.007G059900 DUF292 domain containing protein, expressed -


Gene co-expression network
sample Sobic001G433400 Sobic001G433400 Sobic002G045300 Sobic002G045300 Sobic001G433400--Sobic002G045300 Sobic002G400000 Sobic002G400000 Sobic001G433400--Sobic002G400000 Sobic003G367451 Sobic003G367451 Sobic001G433400--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic001G433400--Sobic009G146100 Sobic009G135600 Sobic009G135600 Sobic001G433400--Sobic009G135600 Sobic003G253000 Sobic003G253000 Sobic001G433400--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic001G433400--Sobic003G220600 Sobic004G327300 Sobic004G327300 Sobic001G433400--Sobic004G327300 Sobic007G186300 Sobic007G186300 Sobic001G433400--Sobic007G186300 Sobic002G045300--Sobic001G433400 Sobic010G042100 Sobic010G042100 Sobic002G045300--Sobic010G042100 Sobic002G045300--Sobic003G253000 Sobic002G045300--Sobic003G220600 Sobic004G049900 Sobic004G049900 Sobic002G045300--Sobic004G049900 Sobic002G045300--Sobic003G367451 Sobic003G130800 Sobic003G130800 Sobic002G045300--Sobic003G130800 Sobic002G045300--Sobic009G135600 Sobic010G101500 Sobic010G101500 Sobic002G045300--Sobic010G101500 Sobic007G168600 Sobic007G168600 Sobic002G400000--Sobic007G168600 Sobic003G077900 Sobic003G077900 Sobic002G400000--Sobic003G077900 Sobic009G198500 Sobic009G198500 Sobic002G400000--Sobic009G198500 Sobic004G130900 Sobic004G130900 Sobic002G400000--Sobic004G130900 Sobic002G400000--Sobic001G433400 Sobic001G395400 Sobic001G395400 Sobic002G400000--Sobic001G395400 Sobic002G400000--Sobic004G327300 Sobic009G004600 Sobic009G004600 Sobic002G400000--Sobic009G004600 Sobic010G000900 Sobic010G000900 Sobic002G400000--Sobic010G000900 Sobic003G367451--Sobic004G327300 Sobic001G236300 Sobic001G236300 Sobic003G367451--Sobic001G236300 Sobic007G114200 Sobic007G114200 Sobic003G367451--Sobic007G114200 Sobic003G367451--Sobic001G433400 Sobic004G272800 Sobic004G272800 Sobic003G367451--Sobic004G272800 Sobic002G083266 Sobic002G083266 Sobic003G367451--Sobic002G083266 Sobic003G367451--Sobic004G130900 Sobic003G367451--Sobic003G253000 Sobic003G367451--Sobic003G220600 Sobic010G253800 Sobic010G253800 Sobic009G146100--Sobic010G253800 Sobic009G146100--Sobic003G253000 Sobic001G415500 Sobic001G415500 Sobic009G146100--Sobic001G415500 Sobic009G146100--Sobic001G433400 Sobic009G146100--Sobic009G135600 Sobic008G161800 Sobic008G161800 Sobic009G146100--Sobic008G161800 Sobic009G146100--Sobic007G186300 Sobic001G461900 Sobic001G461900 Sobic009G146100--Sobic001G461900 Sobic007G045600 Sobic007G045600 Sobic009G146100--Sobic007G045600 Sobic009G135600--Sobic001G461900 Sobic003G349300 Sobic003G349300 Sobic009G135600--Sobic003G349300 Sobic009G135600--Sobic009G146100 Sobic009G135600--Sobic001G433400 Sobic002G385900 Sobic002G385900 Sobic009G135600--Sobic002G385900 Sobic001G388200 Sobic001G388200 Sobic009G135600--Sobic001G388200 Sobic009G135600--Sobic002G400000 Sobic001G294900 Sobic001G294900 Sobic009G135600--Sobic001G294900 Sobic001G054200 Sobic001G054200 Sobic009G135600--Sobic001G054200 Sobic006G141500 Sobic006G141500 Sobic003G253000--Sobic006G141500 Sobic003G253000--Sobic004G049900 Sobic002G267500 Sobic002G267500 Sobic003G253000--Sobic002G267500 Sobic003G253000--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic003G253000--Sobic002G046100 Sobic009G185800 Sobic009G185800 Sobic003G253000--Sobic009G185800 Sobic006G108400 Sobic006G108400 Sobic003G253000--Sobic006G108400 Sobic003G248600 Sobic003G248600 Sobic003G220600--Sobic003G248600 Sobic002G202300 Sobic002G202300 Sobic003G220600--Sobic002G202300 Sobic003G220600--Sobic003G253000 Sobic003G115800 Sobic003G115800 Sobic003G220600--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic003G220600--Sobic007G059900 Sobic004G293700 Sobic004G293700 Sobic003G220600--Sobic004G293700 Sobic004G300900 Sobic004G300900 Sobic003G220600--Sobic004G300900 Sobic003G220600--Sobic003G367451 Sobic003G220600--Sobic009G146100 Sobic004G327300--Sobic003G367451 Sobic001G005900 Sobic001G005900 Sobic004G327300--Sobic001G005900 Sobic007G096700 Sobic007G096700 Sobic004G327300--Sobic007G096700 Sobic004G327300--Sobic002G400000 Sobic004G327300--Sobic004G130900 Sobic004G327300--Sobic001G461900 Sobic009G174900 Sobic009G174900 Sobic004G327300--Sobic009G174900 Sobic004G327300--Sobic009G198500 Sobic004G327300--Sobic007G114200 Sobic003G007500 Sobic003G007500 Sobic007G186300--Sobic003G007500 Sobic007G186300--Sobic001G054200 Sobic007G186300--Sobic003G115800 Sobic007G186300--Sobic003G248600 Sobic001G007200 Sobic001G007200 Sobic007G186300--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic007G186300--Sobic009G246950 Sobic010G083700 Sobic010G083700 Sobic007G186300--Sobic010G083700 Sobic007G186300--Sobic009G146100 Sobic009G152200 Sobic009G152200 Sobic007G186300--Sobic009G152200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.