Gene annotation
Transcriptome id Sobic.010G042100.1
Synonym Sb10g003710
Functional annotation transcription elongation factor 1, putative, expressed
UniProt C5Z4C0
Pfam PF05129
Panther DB PTHR20934
NCBI CDD KOG3214; Uncharacterized Zn ribbon-containing protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46030 : -
RAP-DB (Rice) LOC_Os02g04160.1 : transcription elongation factor 1, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK19597
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G042100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
2 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.003G117900 protein kinase, putative, expressed -
4 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
5 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
6 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
7 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
8 Sobic.004G020000 translation initiation factor eIF3 subunit, putative, expressed K03245: translation initiation factor 3 subunit J
9 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
10 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
11 Sobic.009G185800 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
12 Sobic.005G034400 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
13 Sobic.010G277800 lysM domain containing protein, putative, expressed -
14 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
15 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
16 Sobic.002G264400 metallo-beta-lactamase family protein, putative, expressed K01069: gloB, gloC, hydroxyacylglutathione hydrolase
17 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
18 Sobic.001G388200 ELMO/CED-12 family protein, putative, expressed -
19 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
20 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C


Gene co-expression network
sample Sobic010G042100 Sobic010G042100 Sobic002G045300 Sobic002G045300 Sobic010G042100--Sobic002G045300 Sobic001G433400 Sobic001G433400 Sobic010G042100--Sobic001G433400 Sobic003G117900 Sobic003G117900 Sobic010G042100--Sobic003G117900 Sobic009G135600 Sobic009G135600 Sobic010G042100--Sobic009G135600 Sobic002G385900 Sobic002G385900 Sobic010G042100--Sobic002G385900 Sobic003G367451 Sobic003G367451 Sobic010G042100--Sobic003G367451 Sobic003G253000 Sobic003G253000 Sobic010G042100--Sobic003G253000 Sobic004G020000 Sobic004G020000 Sobic010G042100--Sobic004G020000 Sobic001G461900 Sobic001G461900 Sobic010G042100--Sobic001G461900 Sobic002G045300--Sobic001G433400 Sobic002G045300--Sobic010G042100 Sobic002G045300--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic002G045300--Sobic003G220600 Sobic004G049900 Sobic004G049900 Sobic002G045300--Sobic004G049900 Sobic002G045300--Sobic003G367451 Sobic003G130800 Sobic003G130800 Sobic002G045300--Sobic003G130800 Sobic002G045300--Sobic009G135600 Sobic010G101500 Sobic010G101500 Sobic002G045300--Sobic010G101500 Sobic001G433400--Sobic002G045300 Sobic002G400000 Sobic002G400000 Sobic001G433400--Sobic002G400000 Sobic001G433400--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic001G433400--Sobic009G146100 Sobic001G433400--Sobic009G135600 Sobic001G433400--Sobic003G253000 Sobic001G433400--Sobic003G220600 Sobic004G327300 Sobic004G327300 Sobic001G433400--Sobic004G327300 Sobic007G186300 Sobic007G186300 Sobic001G433400--Sobic007G186300 Sobic003G117900--Sobic010G042100 Sobic003G370900 Sobic003G370900 Sobic003G117900--Sobic003G370900 Sobic001G106700 Sobic001G106700 Sobic003G117900--Sobic001G106700 Sobic001G329100 Sobic001G329100 Sobic003G117900--Sobic001G329100 Sobic001G007200 Sobic001G007200 Sobic003G117900--Sobic001G007200 Sobic004G167400 Sobic004G167400 Sobic003G117900--Sobic004G167400 Sobic004G067100 Sobic004G067100 Sobic003G117900--Sobic004G067100 Sobic003G117900--Sobic002G045300 Sobic010G253800 Sobic010G253800 Sobic003G117900--Sobic010G253800 Sobic009G135600--Sobic001G461900 Sobic003G349300 Sobic003G349300 Sobic009G135600--Sobic003G349300 Sobic009G135600--Sobic009G146100 Sobic009G135600--Sobic001G433400 Sobic009G135600--Sobic002G385900 Sobic001G388200 Sobic001G388200 Sobic009G135600--Sobic001G388200 Sobic009G135600--Sobic002G400000 Sobic001G294900 Sobic001G294900 Sobic009G135600--Sobic001G294900 Sobic001G054200 Sobic001G054200 Sobic009G135600--Sobic001G054200 Sobic002G385900--Sobic009G135600 Sobic001G057800 Sobic001G057800 Sobic002G385900--Sobic001G057800 Sobic002G385900--Sobic001G461900 Sobic003G099100 Sobic003G099100 Sobic002G385900--Sobic003G099100 Sobic002G166900 Sobic002G166900 Sobic002G385900--Sobic002G166900 Sobic002G385900--Sobic010G042100 Sobic001G323000 Sobic001G323000 Sobic002G385900--Sobic001G323000 Sobic009G207000 Sobic009G207000 Sobic002G385900--Sobic009G207000 Sobic006G281800 Sobic006G281800 Sobic002G385900--Sobic006G281800 Sobic003G367451--Sobic004G327300 Sobic001G236300 Sobic001G236300 Sobic003G367451--Sobic001G236300 Sobic007G114200 Sobic007G114200 Sobic003G367451--Sobic007G114200 Sobic003G367451--Sobic001G433400 Sobic004G272800 Sobic004G272800 Sobic003G367451--Sobic004G272800 Sobic002G083266 Sobic002G083266 Sobic003G367451--Sobic002G083266 Sobic004G130900 Sobic004G130900 Sobic003G367451--Sobic004G130900 Sobic003G367451--Sobic003G253000 Sobic003G367451--Sobic003G220600 Sobic006G141500 Sobic006G141500 Sobic003G253000--Sobic006G141500 Sobic003G253000--Sobic004G049900 Sobic002G267500 Sobic002G267500 Sobic003G253000--Sobic002G267500 Sobic003G253000--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic003G253000--Sobic002G046100 Sobic009G185800 Sobic009G185800 Sobic003G253000--Sobic009G185800 Sobic006G108400 Sobic006G108400 Sobic003G253000--Sobic006G108400 Sobic005G034400 Sobic005G034400 Sobic004G020000--Sobic005G034400 Sobic004G020000--Sobic003G220600 Sobic004G020000--Sobic002G045300 Sobic004G020000--Sobic002G083266 Sobic001G440700 Sobic001G440700 Sobic004G020000--Sobic001G440700 Sobic004G020000--Sobic010G042100 Sobic006G264300 Sobic006G264300 Sobic004G020000--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic004G020000--Sobic001G415000 Sobic002G153500 Sobic002G153500 Sobic004G020000--Sobic002G153500 Sobic001G461900--Sobic009G135600 Sobic007G045600 Sobic007G045600 Sobic001G461900--Sobic007G045600 Sobic001G461900--Sobic009G146100 Sobic001G461900--Sobic004G327300 Sobic007G142500 Sobic007G142500 Sobic001G461900--Sobic007G142500 Sobic007G168600 Sobic007G168600 Sobic001G461900--Sobic007G168600 Sobic004G086600 Sobic004G086600 Sobic001G461900--Sobic004G086600 Sobic004G335000 Sobic004G335000 Sobic001G461900--Sobic004G335000 Sobic007G096700 Sobic007G096700 Sobic001G461900--Sobic007G096700
Octagon: transcription factors


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