Gene annotation
Transcriptome id Sobic.010G277800.1
Synonym Sb10g031130
Functional annotation lysM domain containing protein, putative, expressed
UniProt C5Z2M0
Pfam PF01476
Panther DB PTHR20932 PTHR20932:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G23130 : Peptidoglycan-binding LysM domain-containing protein
RAP-DB (Rice) LOC_Os06g51360.1 : lysM domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a041677
Brachypodium PNT75280
Barley HORVU7Hr1G120120.3 , HORVU7Hr1G120120.2 , HORVU7Hr1G120120.1 , HORVU7Hr1G120120.5 , HORVU7Hr1G120120.4
Wheat TraesCS7A02G560400 , TraesCS7B02G486800 , TraesCS7D02G549400
Populus -


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cDNA sequences
Sobic.010G277800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G042100 transcription elongation factor 1, putative, expressed -
2 Sobic.001G040800 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
3 Sobic.009G185800 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
4 Sobic.007G088000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
5 Sobic.002G204100 cytochrome c oxidase copper chaperone, putative, expressed K02260: cytochrome c oxidase assembly protein subunit 17
6 Sobic.005G034400 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
7 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
8 Sobic.002G291200 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00963: UGP2, galU, UTP--glucose-1-phosphate uridylyltransferase
9 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
10 Sobic.009G217900 expressed protein K06875: PDCD5, programmed cell death protein 5
11 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
12 Sobic.009G203100 expressed protein -
13 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
14 Sobic.002G363100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
15 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.010G232100 Constitutively expressed genes(PubMedID : 24456189)@ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
17 Sobic.004G055200 phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
18 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
19 Sobic.004G020000 translation initiation factor eIF3 subunit, putative, expressed K03245: translation initiation factor 3 subunit J
20 Sobic.008G189300 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W


Gene co-expression network
sample Sobic010G277800 Sobic010G277800 Sobic010G042100 Sobic010G042100 Sobic010G277800--Sobic010G042100 Sobic001G040800 Sobic001G040800 Sobic010G277800--Sobic001G040800 Sobic009G185800 Sobic009G185800 Sobic010G277800--Sobic009G185800 Sobic007G088000 Sobic007G088000 Sobic010G277800--Sobic007G088000 Sobic002G204100 Sobic002G204100 Sobic010G277800--Sobic002G204100 Sobic005G034400 Sobic005G034400 Sobic010G277800--Sobic005G034400 Sobic004G272800 Sobic004G272800 Sobic010G277800--Sobic004G272800 Sobic002G291200 Sobic002G291200 Sobic010G277800--Sobic002G291200 Sobic003G253000 Sobic003G253000 Sobic010G277800--Sobic003G253000 Sobic002G045300 Sobic002G045300 Sobic010G042100--Sobic002G045300 Sobic001G433400 Sobic001G433400 Sobic010G042100--Sobic001G433400 Sobic003G117900 Sobic003G117900 Sobic010G042100--Sobic003G117900 Sobic009G135600 Sobic009G135600 Sobic010G042100--Sobic009G135600 Sobic002G385900 Sobic002G385900 Sobic010G042100--Sobic002G385900 Sobic003G367451 Sobic003G367451 Sobic010G042100--Sobic003G367451 Sobic010G042100--Sobic003G253000 Sobic004G020000 Sobic004G020000 Sobic010G042100--Sobic004G020000 Sobic001G461900 Sobic001G461900 Sobic010G042100--Sobic001G461900 Sobic002G194100 Sobic002G194100 Sobic001G040800--Sobic002G194100 Sobic001G040800--Sobic003G253000 Sobic009G001400 Sobic009G001400 Sobic001G040800--Sobic009G001400 Sobic002G363100 Sobic002G363100 Sobic001G040800--Sobic002G363100 Sobic002G202300 Sobic002G202300 Sobic001G040800--Sobic002G202300 Sobic003G130800 Sobic003G130800 Sobic001G040800--Sobic003G130800 Sobic002G355300 Sobic002G355300 Sobic001G040800--Sobic002G355300 Sobic007G114200 Sobic007G114200 Sobic001G040800--Sobic007G114200 Sobic001G040800--Sobic007G088000 Sobic001G459200 Sobic001G459200 Sobic009G185800--Sobic001G459200 Sobic004G049900 Sobic004G049900 Sobic009G185800--Sobic004G049900 Sobic009G185800--Sobic003G253000 Sobic009G185800--Sobic003G130800 Sobic006G108400 Sobic006G108400 Sobic009G185800--Sobic006G108400 Sobic003G350300 Sobic003G350300 Sobic009G185800--Sobic003G350300 Sobic004G330700 Sobic004G330700 Sobic009G185800--Sobic004G330700 Sobic009G185800--Sobic004G272800 Sobic003G181500 Sobic003G181500 Sobic009G185800--Sobic003G181500 Sobic003G306100 Sobic003G306100 Sobic007G088000--Sobic003G306100 Sobic004G055200 Sobic004G055200 Sobic007G088000--Sobic004G055200 Sobic004G187900 Sobic004G187900 Sobic007G088000--Sobic004G187900 Sobic001G281400 Sobic001G281400 Sobic007G088000--Sobic001G281400 Sobic009G141800 Sobic009G141800 Sobic007G088000--Sobic009G141800 Sobic007G088000--Sobic001G040800 Sobic007G088000--Sobic001G459200 Sobic006G099700 Sobic006G099700 Sobic007G088000--Sobic006G099700 Sobic001G499300 Sobic001G499300 Sobic007G088000--Sobic001G499300 Sobic009G203100 Sobic009G203100 Sobic002G204100--Sobic009G203100 Sobic002G204100--Sobic003G253000 Sobic002G204100--Sobic001G459200 Sobic002G204100--Sobic009G185800 Sobic002G204100--Sobic005G034400 Sobic002G204100--Sobic004G049900 Sobic002G204100--Sobic004G055200 Sobic008G189300 Sobic008G189300 Sobic002G204100--Sobic008G189300 Sobic002G187500 Sobic002G187500 Sobic002G204100--Sobic002G187500 Sobic008G033600 Sobic008G033600 Sobic005G034400--Sobic008G033600 Sobic005G034400--Sobic004G055200 Sobic005G034400--Sobic001G459200 Sobic005G034400--Sobic004G020000 Sobic005G034400--Sobic003G253000 Sobic002G264400 Sobic002G264400 Sobic005G034400--Sobic002G264400 Sobic001G224400 Sobic001G224400 Sobic005G034400--Sobic001G224400 Sobic002G267500 Sobic002G267500 Sobic005G034400--Sobic002G267500 Sobic001G288800 Sobic001G288800 Sobic005G034400--Sobic001G288800 Sobic004G272800--Sobic002G267500 Sobic004G272800--Sobic001G281400 Sobic004G272800--Sobic003G253000 Sobic001G048832 Sobic001G048832 Sobic004G272800--Sobic001G048832 Sobic002G190900 Sobic002G190900 Sobic004G272800--Sobic002G190900 Sobic002G345300 Sobic002G345300 Sobic004G272800--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic004G272800--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic004G272800--Sobic010G041600 Sobic005G188100 Sobic005G188100 Sobic004G272800--Sobic005G188100 Sobic002G291200--Sobic009G203100 Sobic004G219300 Sobic004G219300 Sobic002G291200--Sobic004G219300 Sobic002G291200--Sobic002G194100 Sobic002G291200--Sobic009G185800 Sobic002G291200--Sobic010G277800 Sobic002G291200--Sobic001G459200 Sobic002G291200--Sobic005G034400 Sobic002G291200--Sobic001G040800 Sobic002G291200--Sobic010G042100 Sobic006G141500 Sobic006G141500 Sobic003G253000--Sobic006G141500 Sobic003G253000--Sobic004G049900 Sobic003G253000--Sobic002G267500 Sobic003G253000--Sobic004G272800 Sobic003G253000--Sobic001G459200 Sobic003G253000--Sobic002G345300 Sobic003G253000--Sobic002G046100 Sobic003G253000--Sobic009G185800 Sobic003G253000--Sobic006G108400
Octagon: transcription factors


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