Gene annotation
Transcriptome id Sobic.002G363100.2
Synonym EIF-5A, EIF5A, ELF5A-1, ATELF5A-1
Functional annotation eukaryotic translation initiation factor 5A, putative, expressed
UniProt A0A1B6QFD0
Pfam PF01287
Panther DB PTHR11673 PTHR11673:SF8
NCBI CDD KOG3271; Translation initiation factor 5A (eIF-5A)
KEGG Orthology K03263; translation initiation factor 5A
Gene Ontology GO:0006452; translational frameshifting GO:0003746translation elongation factor activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT1G13950 : eukaryotic elongation factor 5A-1
RAP-DB (Rice) LOC_Os07g40580.1 : eukaryotic translation initiation factor 5A, putative, expressed
MaizeGDB (Corn) Zm00025a048648 , Zm00025a015095
Brachypodium PNT74829 , KQK21172
Barley -
Wheat TraesCS2A02G182600 , TraesCS2D02G190400 , TraesCS2A02G182600 , TraesCS2B02G209100
Populus PNT23646 , PNT23645


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cDNA sequences
Sobic.002G363100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G240900 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
2 Sobic.001G040800 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
3 Sobic.009G001400 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
4 Sobic.001G357300 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
5 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
6 Sobic.009G217900 expressed protein K06875: PDCD5, programmed cell death protein 5
7 Sobic.001G005900 PPR repeat domain containing protein, putative, expressed -
8 Sobic.004G130100 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
9 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
10 Sobic.002G306900 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
11 Sobic.001G478000 CutA, chloroplast precursor, putative, expressed K03926: periplasmic divalent cation tolerance protein
12 Sobic.001G388600 histidine triad family protein, putative, expressed K02503: HINT1, hinT, histidine triad (HIT) family protein
13 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
14 Sobic.007G100425 - -
15 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
16 Sobic.002G073800 vacuolar ATPase G subunit, putative, expressed K02152: ATPeV1G, V-type H+-transporting ATPase subunit G
17 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
18 Sobic.001G034700 actin-depolymerizing factor, putative, expressed K05765: cofilin
19 Sobic.001G501200 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
20 Sobic.005G133900 TPR repeat region family protein, expressed -


Gene co-expression network
sample Sobic002G363100 Sobic002G363100 Sobic009G240900 Sobic009G240900 Sobic002G363100--Sobic009G240900 Sobic001G040800 Sobic001G040800 Sobic002G363100--Sobic001G040800 Sobic009G001400 Sobic009G001400 Sobic002G363100--Sobic009G001400 Sobic001G357300 Sobic001G357300 Sobic002G363100--Sobic001G357300 Sobic007G114200 Sobic007G114200 Sobic002G363100--Sobic007G114200 Sobic009G217900 Sobic009G217900 Sobic002G363100--Sobic009G217900 Sobic001G005900 Sobic001G005900 Sobic002G363100--Sobic001G005900 Sobic004G130100 Sobic004G130100 Sobic002G363100--Sobic004G130100 Sobic004G327300 Sobic004G327300 Sobic002G363100--Sobic004G327300 Sobic001G478000 Sobic001G478000 Sobic009G240900--Sobic001G478000 Sobic009G240900--Sobic002G363100 Sobic004G138800 Sobic004G138800 Sobic009G240900--Sobic004G138800 Sobic007G076300 Sobic007G076300 Sobic009G240900--Sobic007G076300 Sobic004G310300 Sobic004G310300 Sobic009G240900--Sobic004G310300 Sobic009G240900--Sobic001G040800 Sobic003G368500 Sobic003G368500 Sobic009G240900--Sobic003G368500 Sobic007G051000 Sobic007G051000 Sobic009G240900--Sobic007G051000 Sobic002G428200 Sobic002G428200 Sobic009G240900--Sobic002G428200 Sobic002G194100 Sobic002G194100 Sobic001G040800--Sobic002G194100 Sobic003G253000 Sobic003G253000 Sobic001G040800--Sobic003G253000 Sobic001G040800--Sobic009G001400 Sobic001G040800--Sobic002G363100 Sobic002G202300 Sobic002G202300 Sobic001G040800--Sobic002G202300 Sobic003G130800 Sobic003G130800 Sobic001G040800--Sobic003G130800 Sobic002G355300 Sobic002G355300 Sobic001G040800--Sobic002G355300 Sobic001G040800--Sobic007G114200 Sobic007G088000 Sobic007G088000 Sobic001G040800--Sobic007G088000 Sobic009G001400--Sobic007G114200 Sobic010G188100 Sobic010G188100 Sobic009G001400--Sobic010G188100 Sobic009G001400--Sobic001G040800 Sobic003G367451 Sobic003G367451 Sobic009G001400--Sobic003G367451 Sobic009G001400--Sobic002G363100 Sobic001G220400 Sobic001G220400 Sobic009G001400--Sobic001G220400 Sobic006G182100 Sobic006G182100 Sobic009G001400--Sobic006G182100 Sobic010G018400 Sobic010G018400 Sobic009G001400--Sobic010G018400 Sobic003G220600 Sobic003G220600 Sobic009G001400--Sobic003G220600 Sobic001G357300--Sobic002G363100 Sobic005G133900 Sobic005G133900 Sobic001G357300--Sobic005G133900 Sobic004G057200 Sobic004G057200 Sobic001G357300--Sobic004G057200 Sobic002G306900 Sobic002G306900 Sobic001G357300--Sobic002G306900 Sobic010G277800 Sobic010G277800 Sobic001G357300--Sobic010G277800 Sobic001G357300--Sobic009G217900 Sobic001G357300--Sobic009G001400 Sobic010G019300 Sobic010G019300 Sobic001G357300--Sobic010G019300 Sobic001G357300--Sobic009G240900 Sobic007G045600 Sobic007G045600 Sobic007G114200--Sobic007G045600 Sobic007G114200--Sobic003G367451 Sobic001G236300 Sobic001G236300 Sobic007G114200--Sobic001G236300 Sobic007G114200--Sobic009G001400 Sobic007G114200--Sobic002G428200 Sobic006G252200 Sobic006G252200 Sobic007G114200--Sobic006G252200 Sobic002G214900 Sobic002G214900 Sobic007G114200--Sobic002G214900 Sobic007G114200--Sobic004G327300 Sobic007G114200--Sobic004G138800 Sobic009G217900--Sobic004G130100 Sobic009G217900--Sobic002G363100 Sobic001G501200 Sobic001G501200 Sobic009G217900--Sobic001G501200 Sobic010G205300 Sobic010G205300 Sobic009G217900--Sobic010G205300 Sobic005G033200 Sobic005G033200 Sobic009G217900--Sobic005G033200 Sobic010G042100 Sobic010G042100 Sobic009G217900--Sobic010G042100 Sobic001G314500 Sobic001G314500 Sobic009G217900--Sobic001G314500 Sobic003G440800 Sobic003G440800 Sobic009G217900--Sobic003G440800 Sobic009G198500 Sobic009G198500 Sobic009G217900--Sobic009G198500 Sobic001G005900--Sobic009G198500 Sobic001G005900--Sobic004G327300 Sobic004G300900 Sobic004G300900 Sobic001G005900--Sobic004G300900 Sobic001G048832 Sobic001G048832 Sobic001G005900--Sobic001G048832 Sobic002G078400 Sobic002G078400 Sobic001G005900--Sobic002G078400 Sobic001G502200 Sobic001G502200 Sobic001G005900--Sobic001G502200 Sobic004G130900 Sobic004G130900 Sobic001G005900--Sobic004G130900 Sobic007G096700 Sobic007G096700 Sobic001G005900--Sobic007G096700 Sobic001G005900--Sobic001G501200 Sobic004G130100--Sobic009G217900 Sobic006G232200 Sobic006G232200 Sobic004G130100--Sobic006G232200 Sobic004G130100--Sobic001G501200 Sobic003G337000 Sobic003G337000 Sobic004G130100--Sobic003G337000 Sobic004G130100--Sobic002G363100 Sobic003G124800 Sobic003G124800 Sobic004G130100--Sobic003G124800 Sobic004G130100--Sobic009G198500 Sobic004G130100--Sobic002G428200 Sobic001G428100 Sobic001G428100 Sobic004G130100--Sobic001G428100 Sobic004G327300--Sobic003G367451 Sobic004G327300--Sobic001G005900 Sobic004G327300--Sobic007G096700 Sobic002G400000 Sobic002G400000 Sobic004G327300--Sobic002G400000 Sobic004G327300--Sobic004G130900 Sobic001G461900 Sobic001G461900 Sobic004G327300--Sobic001G461900 Sobic009G174900 Sobic009G174900 Sobic004G327300--Sobic009G174900 Sobic004G327300--Sobic009G198500 Sobic004G327300--Sobic007G114200
Octagon: transcription factors


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