Gene annotation
Transcriptome id Sobic.005G133900.1
Synonym Sb05g019780
Functional annotation TPR repeat region family protein, expressed
UniProt C5Y3C3
Pfam PF03937
Panther DB PTHR12469
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G51040 : -
RAP-DB (Rice) LOC_Os11g32480.1 : TPR repeat region family protein, expressed
MaizeGDB (Corn) Zm00025a015686 , Zm00025a033585
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G133900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G363100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
2 Sobic.004G057200 cytoplasmic membrane protein, putative, expressed -
3 Sobic.003G244200 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
4 Sobic.001G357300 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
5 Sobic.009G093200 superoxide dismutase, mitochondrial precursor, putative, expressed K04564: superoxide dismutase, Fe-Mn family
6 Sobic.003G216500 vacuolar ATP synthase, putative, expressed K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
7 Sobic.002G133800 monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
8 Sobic.006G002201 - -
9 Sobic.009G240900 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
10 Sobic.007G069200 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
11 Sobic.001G230100 3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
12 Sobic.002G071000 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
13 Sobic.001G447600 squalene monooxygenase, putative, expressed K00511: SQLE, squalene monooxygenase
14 Sobic.004G082900 26S protease regulatory subunit, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4
15 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
16 Sobic.001G281900 miro, putative, expressed K07977: Arf/Sar family, other
17 Sobic.003G103400 anaphase-promoting complex subunit 11, putative, expressed K03868: RBX1, RING-box protein 1
18 Sobic.010G262433 - -
19 Sobic.004G058200 cytidylyltransferase domain containing protein, expressed K00968: choline-phosphate cytidylyltransferase
20 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein


Gene co-expression network
sample Sobic005G133900 Sobic005G133900 Sobic002G363100 Sobic002G363100 Sobic005G133900--Sobic002G363100 Sobic004G057200 Sobic004G057200 Sobic005G133900--Sobic004G057200 Sobic003G244200 Sobic003G244200 Sobic005G133900--Sobic003G244200 Sobic001G357300 Sobic001G357300 Sobic005G133900--Sobic001G357300 Sobic009G093200 Sobic009G093200 Sobic005G133900--Sobic009G093200 Sobic003G216500 Sobic003G216500 Sobic005G133900--Sobic003G216500 Sobic002G133800 Sobic002G133800 Sobic005G133900--Sobic002G133800 Sobic006G002201 Sobic006G002201 Sobic005G133900--Sobic006G002201 Sobic009G240900 Sobic009G240900 Sobic005G133900--Sobic009G240900 Sobic002G363100--Sobic009G240900 Sobic001G040800 Sobic001G040800 Sobic002G363100--Sobic001G040800 Sobic009G001400 Sobic009G001400 Sobic002G363100--Sobic009G001400 Sobic002G363100--Sobic001G357300 Sobic007G114200 Sobic007G114200 Sobic002G363100--Sobic007G114200 Sobic009G217900 Sobic009G217900 Sobic002G363100--Sobic009G217900 Sobic001G005900 Sobic001G005900 Sobic002G363100--Sobic001G005900 Sobic004G130100 Sobic004G130100 Sobic002G363100--Sobic004G130100 Sobic004G327300 Sobic004G327300 Sobic002G363100--Sobic004G327300 Sobic004G057200--Sobic002G133800 Sobic004G057200--Sobic005G133900 Sobic004G057200--Sobic001G357300 Sobic004G057200--Sobic002G363100 Sobic004G057200--Sobic007G114200 Sobic007G137600 Sobic007G137600 Sobic004G057200--Sobic007G137600 Sobic003G367451 Sobic003G367451 Sobic004G057200--Sobic003G367451 Sobic010G188100 Sobic010G188100 Sobic004G057200--Sobic010G188100 Sobic006G261300 Sobic006G261300 Sobic004G057200--Sobic006G261300 Sobic003G244200--Sobic006G002201 Sobic003G244200--Sobic009G093200 Sobic003G244200--Sobic005G133900 Sobic007G161200 Sobic007G161200 Sobic003G244200--Sobic007G161200 Sobic003G244200--Sobic003G216500 Sobic003G244200--Sobic002G363100 Sobic004G099900 Sobic004G099900 Sobic003G244200--Sobic004G099900 Sobic010G180400 Sobic010G180400 Sobic003G244200--Sobic010G180400 Sobic004G082900 Sobic004G082900 Sobic003G244200--Sobic004G082900 Sobic001G357300--Sobic002G363100 Sobic001G357300--Sobic005G133900 Sobic001G357300--Sobic004G057200 Sobic002G306900 Sobic002G306900 Sobic001G357300--Sobic002G306900 Sobic010G277800 Sobic010G277800 Sobic001G357300--Sobic010G277800 Sobic001G357300--Sobic009G217900 Sobic001G357300--Sobic009G001400 Sobic010G019300 Sobic010G019300 Sobic001G357300--Sobic010G019300 Sobic001G357300--Sobic009G240900 Sobic003G428200 Sobic003G428200 Sobic009G093200--Sobic003G428200 Sobic009G093200--Sobic003G244200 Sobic006G203100 Sobic006G203100 Sobic009G093200--Sobic006G203100 Sobic010G044200 Sobic010G044200 Sobic009G093200--Sobic010G044200 Sobic010G073100 Sobic010G073100 Sobic009G093200--Sobic010G073100 Sobic002G423800 Sobic002G423800 Sobic009G093200--Sobic002G423800 Sobic001G338400 Sobic001G338400 Sobic009G093200--Sobic001G338400 Sobic006G211800 Sobic006G211800 Sobic009G093200--Sobic006G211800 Sobic001G478000 Sobic001G478000 Sobic009G093200--Sobic001G478000 Sobic002G410700 Sobic002G410700 Sobic003G216500--Sobic002G410700 Sobic004G182500 Sobic004G182500 Sobic003G216500--Sobic004G182500 Sobic009G240700 Sobic009G240700 Sobic003G216500--Sobic009G240700 Sobic001G473400 Sobic001G473400 Sobic003G216500--Sobic001G473400 Sobic003G170300 Sobic003G170300 Sobic003G216500--Sobic003G170300 Sobic002G073800 Sobic002G073800 Sobic003G216500--Sobic002G073800 Sobic003G279200 Sobic003G279200 Sobic003G216500--Sobic003G279200 Sobic006G020900 Sobic006G020900 Sobic003G216500--Sobic006G020900 Sobic001G290700 Sobic001G290700 Sobic003G216500--Sobic001G290700 Sobic002G133800--Sobic004G057200 Sobic002G133800--Sobic005G133900 Sobic001G422100 Sobic001G422100 Sobic002G133800--Sobic001G422100 Sobic002G133800--Sobic007G114200 Sobic007G136100 Sobic007G136100 Sobic002G133800--Sobic007G136100 Sobic002G133800--Sobic002G363100 Sobic001G236300 Sobic001G236300 Sobic002G133800--Sobic001G236300 Sobic009G257600 Sobic009G257600 Sobic002G133800--Sobic009G257600 Sobic001G283200 Sobic001G283200 Sobic002G133800--Sobic001G283200 Sobic003G103400 Sobic003G103400 Sobic006G002201--Sobic003G103400 Sobic007G061400 Sobic007G061400 Sobic006G002201--Sobic007G061400 Sobic005G105500 Sobic005G105500 Sobic006G002201--Sobic005G105500 Sobic004G291400 Sobic004G291400 Sobic006G002201--Sobic004G291400 Sobic005G111900 Sobic005G111900 Sobic006G002201--Sobic005G111900 Sobic003G196800 Sobic003G196800 Sobic006G002201--Sobic003G196800 Sobic001G468600 Sobic001G468600 Sobic006G002201--Sobic001G468600 Sobic001G458700 Sobic001G458700 Sobic006G002201--Sobic001G458700 Sobic004G124100 Sobic004G124100 Sobic006G002201--Sobic004G124100 Sobic009G240900--Sobic001G478000 Sobic009G240900--Sobic002G363100 Sobic004G138800 Sobic004G138800 Sobic009G240900--Sobic004G138800 Sobic007G076300 Sobic007G076300 Sobic009G240900--Sobic007G076300 Sobic004G310300 Sobic004G310300 Sobic009G240900--Sobic004G310300 Sobic009G240900--Sobic001G040800 Sobic003G368500 Sobic003G368500 Sobic009G240900--Sobic003G368500 Sobic007G051000 Sobic007G051000 Sobic009G240900--Sobic007G051000 Sobic002G428200 Sobic002G428200 Sobic009G240900--Sobic002G428200
Octagon: transcription factors


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