Gene annotation
Transcriptome id Sobic.001G447600.1
Synonym SQE1, XF1, Sb01g042050
Functional annotation squalene monooxygenase, putative, expressed
UniProt C5WRR5
Pfam PF01494
Panther DB PTHR10835 PTHR10835:SF1
NCBI CDD -
KEGG Orthology K00511; SQLE, squalene monooxygenase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G58440 : FAD/NAD(P)-binding oxidoreductase family protein
RAP-DB (Rice) LOC_Os03g12910.1 : squalene monooxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a052980 , Zm00025a001408
Brachypodium KQK22751 , KQK22752
Barley HORVU4Hr1G065920.1 , HORVU4Hr1G065920.2
Wheat TraesCS4A02G059900 , TraesCS4D02G236900 , TraesCS4B02G235500
Populus -


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cDNA sequences
Sobic.001G447600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G069200 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
2 Sobic.003G216500 vacuolar ATP synthase, putative, expressed K03661: ATPeV0B, V-type H+-transporting ATPase 21kDa proteolipid subunit
3 Sobic.003G384300 NADP-dependent oxidoreductase, putative, expressed -
4 Sobic.003G244200 vacuolar ATP synthase subunit E, putative, expressed K02150: ATPeV1E, V-type H+-transporting ATPase subunit E
5 Sobic.002G279700 3-dehydroquinate synthase, putative, expressed K01735: 3-dehydroquinate synthase
6 Sobic.005G004500 ferritin-1, chloroplast precursor, putative, expressed K00522: ferritin heavy chain
7 Sobic.010G024100 tRNA 2-phosphotransferase 1, putative, expressed K10669: TRPT1, 2'-phosphotransferase
8 Sobic.009G017800 glutathione S-transferase, N-terminal domain containing protein, expressed -
9 Sobic.005G133900 TPR repeat region family protein, expressed -
10 Sobic.003G279200 ubiquinone oxidoreductase, putative, expressed K03940: NADH dehydrogenase (ubiquinone) Fe-S protein 7
11 Sobic.002G393700 expressed protein -
12 Sobic.006G261700 DJ-1 family protein, putative, expressed K18881: D-lactate dehydratase
13 Sobic.010G026925 - K01689: ENO, enolase
14 Sobic.001G148500 expressed protein -
15 Sobic.002G128900 thioesterase family protein, putative, expressed -
16 Sobic.001G173500 - -
17 Sobic.003G162000 - K00878: hydroxyethylthiazole kinase
18 Sobic.009G189400 ferredoxin--nitrite reductase("PubMedID : 26759170,PubMedID : 24597475")@ferredoxin--nitrite reductase, putative, expressed K00392: sulfite reductase (ferredoxin)
19 Sobic.001G357300 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
20 Sobic.009G072000 phosphoribosylformylglycinamidine synthase, putative, expressed K01933: phosphoribosylformylglycinamidine cyclo-ligase


Gene co-expression network
sample Sobic001G447600 Sobic001G447600 Sobic007G069200 Sobic007G069200 Sobic001G447600--Sobic007G069200 Sobic003G216500 Sobic003G216500 Sobic001G447600--Sobic003G216500 Sobic003G384300 Sobic003G384300 Sobic001G447600--Sobic003G384300 Sobic003G244200 Sobic003G244200 Sobic001G447600--Sobic003G244200 Sobic002G279700 Sobic002G279700 Sobic001G447600--Sobic002G279700 Sobic005G004500 Sobic005G004500 Sobic001G447600--Sobic005G004500 Sobic010G024100 Sobic010G024100 Sobic001G447600--Sobic010G024100 Sobic009G017800 Sobic009G017800 Sobic001G447600--Sobic009G017800 Sobic005G133900 Sobic005G133900 Sobic001G447600--Sobic005G133900 Sobic007G069200--Sobic003G216500 Sobic007G069200--Sobic001G447600 Sobic001G173500 Sobic001G173500 Sobic007G069200--Sobic001G173500 Sobic007G069200--Sobic003G244200 Sobic007G069200--Sobic005G133900 Sobic009G072000 Sobic009G072000 Sobic007G069200--Sobic009G072000 Sobic007G025400 Sobic007G025400 Sobic007G069200--Sobic007G025400 Sobic010G054000 Sobic010G054000 Sobic007G069200--Sobic010G054000 Sobic006G029800 Sobic006G029800 Sobic007G069200--Sobic006G029800 Sobic002G410700 Sobic002G410700 Sobic003G216500--Sobic002G410700 Sobic004G182500 Sobic004G182500 Sobic003G216500--Sobic004G182500 Sobic009G240700 Sobic009G240700 Sobic003G216500--Sobic009G240700 Sobic001G473400 Sobic001G473400 Sobic003G216500--Sobic001G473400 Sobic003G170300 Sobic003G170300 Sobic003G216500--Sobic003G170300 Sobic002G073800 Sobic002G073800 Sobic003G216500--Sobic002G073800 Sobic003G279200 Sobic003G279200 Sobic003G216500--Sobic003G279200 Sobic006G020900 Sobic006G020900 Sobic003G216500--Sobic006G020900 Sobic001G290700 Sobic001G290700 Sobic003G216500--Sobic001G290700 Sobic003G384300--Sobic001G447600 Sobic003G384300--Sobic010G024100 Sobic004G023900 Sobic004G023900 Sobic003G384300--Sobic004G023900 Sobic003G421201 Sobic003G421201 Sobic003G384300--Sobic003G421201 Sobic004G097200 Sobic004G097200 Sobic003G384300--Sobic004G097200 Sobic008G116000 Sobic008G116000 Sobic003G384300--Sobic008G116000 Sobic003G384300--Sobic003G216500 Sobic003G384300--Sobic002G279700 Sobic003G103400 Sobic003G103400 Sobic003G384300--Sobic003G103400 Sobic006G002201 Sobic006G002201 Sobic003G244200--Sobic006G002201 Sobic009G093200 Sobic009G093200 Sobic003G244200--Sobic009G093200 Sobic003G244200--Sobic005G133900 Sobic007G161200 Sobic007G161200 Sobic003G244200--Sobic007G161200 Sobic003G244200--Sobic003G216500 Sobic002G363100 Sobic002G363100 Sobic003G244200--Sobic002G363100 Sobic004G099900 Sobic004G099900 Sobic003G244200--Sobic004G099900 Sobic010G180400 Sobic010G180400 Sobic003G244200--Sobic010G180400 Sobic004G082900 Sobic004G082900 Sobic003G244200--Sobic004G082900 Sobic002G128900 Sobic002G128900 Sobic002G279700--Sobic002G128900 Sobic006G261700 Sobic006G261700 Sobic002G279700--Sobic006G261700 Sobic001G295300 Sobic001G295300 Sobic002G279700--Sobic001G295300 Sobic002G200900 Sobic002G200900 Sobic002G279700--Sobic002G200900 Sobic002G233700 Sobic002G233700 Sobic002G279700--Sobic002G233700 Sobic008G188600 Sobic008G188600 Sobic002G279700--Sobic008G188600 Sobic001G020100 Sobic001G020100 Sobic002G279700--Sobic001G020100 Sobic008G006200 Sobic008G006200 Sobic002G279700--Sobic008G006200 Sobic004G307400 Sobic004G307400 Sobic002G279700--Sobic004G307400 Sobic005G004500--Sobic002G200900 Sobic006G108200 Sobic006G108200 Sobic005G004500--Sobic006G108200 Sobic004G154800 Sobic004G154800 Sobic005G004500--Sobic004G154800 Sobic004G055000 Sobic004G055000 Sobic005G004500--Sobic004G055000 Sobic001G352200 Sobic001G352200 Sobic005G004500--Sobic001G352200 Sobic005G134100 Sobic005G134100 Sobic005G004500--Sobic005G134100 Sobic004G028300 Sobic004G028300 Sobic005G004500--Sobic004G028300 Sobic001G167900 Sobic001G167900 Sobic005G004500--Sobic001G167900 Sobic002G351600 Sobic002G351600 Sobic005G004500--Sobic002G351600 Sobic002G262000 Sobic002G262000 Sobic010G024100--Sobic002G262000 Sobic010G156000 Sobic010G156000 Sobic010G024100--Sobic010G156000 Sobic009G178200 Sobic009G178200 Sobic010G024100--Sobic009G178200 Sobic001G412100 Sobic001G412100 Sobic010G024100--Sobic001G412100 Sobic010G265300 Sobic010G265300 Sobic010G024100--Sobic010G265300 Sobic002G332900 Sobic002G332900 Sobic010G024100--Sobic002G332900 Sobic009G243100 Sobic009G243100 Sobic010G024100--Sobic009G243100 Sobic001G447900 Sobic001G447900 Sobic010G024100--Sobic001G447900 Sobic010G108900 Sobic010G108900 Sobic010G024100--Sobic010G108900 Sobic009G015700 Sobic009G015700 Sobic009G017800--Sobic009G015700 Sobic001G301800 Sobic001G301800 Sobic009G017800--Sobic001G301800 Sobic001G496300 Sobic001G496300 Sobic009G017800--Sobic001G496300 Sobic009G017800--Sobic001G020100 Sobic009G017800--Sobic001G447600 Sobic006G097200 Sobic006G097200 Sobic009G017800--Sobic006G097200 Sobic003G380600 Sobic003G380600 Sobic009G017800--Sobic003G380600 Sobic010G026925 Sobic010G026925 Sobic009G017800--Sobic010G026925 Sobic001G407600 Sobic001G407600 Sobic009G017800--Sobic001G407600 Sobic005G133900--Sobic002G363100 Sobic004G057200 Sobic004G057200 Sobic005G133900--Sobic004G057200 Sobic005G133900--Sobic003G244200 Sobic001G357300 Sobic001G357300 Sobic005G133900--Sobic001G357300 Sobic005G133900--Sobic009G093200 Sobic005G133900--Sobic003G216500 Sobic002G133800 Sobic002G133800 Sobic005G133900--Sobic002G133800 Sobic005G133900--Sobic006G002201 Sobic009G240900 Sobic009G240900 Sobic005G133900--Sobic009G240900
Octagon: transcription factors


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