Gene annotation
Transcriptome id Sobic.002G393700.1,Sobic.002G393700.2
Synonym SYTE, Sb02g040900, NTMC2T2.1, SYT5, NTMC2TYPE2.1, ATSYTE
Functional annotation expressed protein
UniProt A0A1W0W7H3 , A0A1B6QFU3
Pfam PF17047 PF00168
Panther DB PTHR10774 PTHR10774:SF91
NCBI CDD KOG1328; Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G05500 : Calcium-dependent lipid-binding (CaLB domain) family protein
RAP-DB (Rice) LOC_Os08g20544.1 : expressed protein
MaizeGDB (Corn) Zm00025a015306
Brachypodium KQJ95976
Barley HORVU6Hr1G017900.11 , HORVU6Hr1G017900.10 , HORVU6Hr1G017900.13 , HORVU6Hr1G017900.12 , HORVU6Hr1G017900.15 , HORVU6Hr1G017900.14 , HORVU6Hr1G017900.17 , HORVU6Hr1G017900.16 , HORVU6Hr1G017900.19 , HORVU6Hr1G017900.18 , HORVU6Hr1G017900.20 , HORVU6Hr1G017900.5 , HORVU6Hr1G017900.4 , HORVU6Hr1G017900.7 , HORVU6Hr1G017900.6 , HORVU6Hr1G017900.1 , HORVU6Hr1G017900.3 , HORVU6Hr1G017900.2 , HORVU6Hr1G017900.9 , HORVU6Hr1G017900.8
Wheat TraesCS6A02G098900 , TraesCS6A02G098900 , TraesCS6D02G083600 , TraesCS6D02G083600 , TraesCS6D02G083600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G170200 zinc finger family protein, putative, expressed -
2 Sobic.001G435400 vacuolar ATP synthase 98 kDa subunit, putative, expressed K02154: ATPeV0A, V-type H+-transporting ATPase subunit a
3 Sobic.006G261700 DJ-1 family protein, putative, expressed K18881: D-lactate dehydratase
4 Sobic.007G079400 cytidylyltransferase domain containing protein, expressed K00967: ethanolamine-phosphate cytidylyltransferase
5 Sobic.006G127600 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
6 Sobic.003G176000 lipase family protein, putative, expressed -
7 Sobic.001G009600 ATPase, AFG1 family domain containing protein, expressed -
8 Sobic.004G018000 bifunctional protein folD, putative, expressed -
9 Sobic.001G412100 CDP-alcohol phosphatidyltransferase, putative, expressed K00995: pgsA, CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase
10 Sobic.004G275600 hydrolase, putative, expressed K01438: acetylornithine deacetylase
11 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
12 Sobic.006G073200 OTU-like cysteine protease family protein, putative, expressed K12655: OTUD5, OTU domain-containing protein 5
13 Sobic.009G155600 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
14 Sobic.009G207300 ubiquitin domain-containing protein 1, putative, expressed -
15 Sobic.003G433200 BAS1, putative, expressed -
16 Sobic.004G131800 sirohydrochlorin ferrochelatase, putative, expressed -
17 Sobic.008G033500 nucleolar GTPase, putative, expressed -
18 Sobic.004G344000 expressed protein -
19 Sobic.001G447200 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
20 Sobic.008G157200 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase


Gene co-expression network
sample Sobic002G393700 Sobic002G393700 Sobic002G170200 Sobic002G170200 Sobic002G393700--Sobic002G170200 Sobic001G435400 Sobic001G435400 Sobic002G393700--Sobic001G435400 Sobic006G261700 Sobic006G261700 Sobic002G393700--Sobic006G261700 Sobic007G079400 Sobic007G079400 Sobic002G393700--Sobic007G079400 Sobic006G127600 Sobic006G127600 Sobic002G393700--Sobic006G127600 Sobic003G176000 Sobic003G176000 Sobic002G393700--Sobic003G176000 Sobic001G009600 Sobic001G009600 Sobic002G393700--Sobic001G009600 Sobic004G018000 Sobic004G018000 Sobic002G393700--Sobic004G018000 Sobic001G412100 Sobic001G412100 Sobic002G393700--Sobic001G412100 Sobic004G131800 Sobic004G131800 Sobic002G170200--Sobic004G131800 Sobic001G283600 Sobic001G283600 Sobic002G170200--Sobic001G283600 Sobic002G170200--Sobic003G176000 Sobic005G198000 Sobic005G198000 Sobic002G170200--Sobic005G198000 Sobic006G056700 Sobic006G056700 Sobic002G170200--Sobic006G056700 Sobic002G170200--Sobic006G127600 Sobic006G039400 Sobic006G039400 Sobic002G170200--Sobic006G039400 Sobic007G162100 Sobic007G162100 Sobic002G170200--Sobic007G162100 Sobic006G261400 Sobic006G261400 Sobic002G170200--Sobic006G261400 Sobic001G435400--Sobic007G162100 Sobic001G435400--Sobic006G127600 Sobic004G094700 Sobic004G094700 Sobic001G435400--Sobic004G094700 Sobic001G435400--Sobic001G283600 Sobic001G435400--Sobic006G039400 Sobic008G033500 Sobic008G033500 Sobic001G435400--Sobic008G033500 Sobic004G060100 Sobic004G060100 Sobic001G435400--Sobic004G060100 Sobic008G021200 Sobic008G021200 Sobic001G435400--Sobic008G021200 Sobic005G018800 Sobic005G018800 Sobic001G435400--Sobic005G018800 Sobic002G279700 Sobic002G279700 Sobic006G261700--Sobic002G279700 Sobic009G140300 Sobic009G140300 Sobic006G261700--Sobic009G140300 Sobic008G171300 Sobic008G171300 Sobic006G261700--Sobic008G171300 Sobic001G020100 Sobic001G020100 Sobic006G261700--Sobic001G020100 Sobic004G307400 Sobic004G307400 Sobic006G261700--Sobic004G307400 SobicK031800 SobicK031800 Sobic006G261700--SobicK031800 Sobic004G343900 Sobic004G343900 Sobic006G261700--Sobic004G343900 Sobic008G188600 Sobic008G188600 Sobic006G261700--Sobic008G188600 Sobic001G254600 Sobic001G254600 Sobic006G261700--Sobic001G254600 Sobic007G108400 Sobic007G108400 Sobic007G079400--Sobic007G108400 Sobic003G105900 Sobic003G105900 Sobic007G079400--Sobic003G105900 Sobic001G057700 Sobic001G057700 Sobic007G079400--Sobic001G057700 Sobic003G264800 Sobic003G264800 Sobic007G079400--Sobic003G264800 Sobic002G401000 Sobic002G401000 Sobic007G079400--Sobic002G401000 Sobic003G373600 Sobic003G373600 Sobic007G079400--Sobic003G373600 Sobic007G079400--Sobic002G393700 Sobic005G062700 Sobic005G062700 Sobic007G079400--Sobic005G062700 Sobic004G344000 Sobic004G344000 Sobic007G079400--Sobic004G344000 Sobic006G127600--Sobic007G162100 Sobic006G127600--Sobic006G261400 Sobic008G157200 Sobic008G157200 Sobic006G127600--Sobic008G157200 Sobic009G256900 Sobic009G256900 Sobic006G127600--Sobic009G256900 Sobic010G000800 Sobic010G000800 Sobic006G127600--Sobic010G000800 Sobic001G251100 Sobic001G251100 Sobic006G127600--Sobic001G251100 Sobic001G333100 Sobic001G333100 Sobic006G127600--Sobic001G333100 Sobic003G379200 Sobic003G379200 Sobic006G127600--Sobic003G379200 Sobic006G131000 Sobic006G131000 Sobic006G127600--Sobic006G131000 Sobic003G176000--Sobic004G131800 Sobic002G344000 Sobic002G344000 Sobic003G176000--Sobic002G344000 Sobic002G211800 Sobic002G211800 Sobic003G176000--Sobic002G211800 Sobic003G176000--Sobic002G170200 Sobic010G032900 Sobic010G032900 Sobic003G176000--Sobic010G032900 Sobic003G253600 Sobic003G253600 Sobic003G176000--Sobic003G253600 Sobic002G325300 Sobic002G325300 Sobic003G176000--Sobic002G325300 Sobic002G294800 Sobic002G294800 Sobic003G176000--Sobic002G294800 Sobic005G059800 Sobic005G059800 Sobic003G176000--Sobic005G059800 Sobic001G009600--Sobic002G393700 Sobic003G402000 Sobic003G402000 Sobic001G009600--Sobic003G402000 Sobic001G009600--Sobic002G170200 Sobic004G198600 Sobic004G198600 Sobic001G009600--Sobic004G198600 Sobic006G029700 Sobic006G029700 Sobic001G009600--Sobic006G029700 Sobic010G155600 Sobic010G155600 Sobic001G009600--Sobic010G155600 Sobic002G388000 Sobic002G388000 Sobic001G009600--Sobic002G388000 Sobic001G009600--Sobic005G198000 Sobic009G107300 Sobic009G107300 Sobic001G009600--Sobic009G107300 Sobic001G178300 Sobic001G178300 Sobic004G018000--Sobic001G178300 Sobic008G116000 Sobic008G116000 Sobic004G018000--Sobic008G116000 Sobic001G537500 Sobic001G537500 Sobic004G018000--Sobic001G537500 Sobic001G486700 Sobic001G486700 Sobic004G018000--Sobic001G486700 Sobic001G003100 Sobic001G003100 Sobic004G018000--Sobic001G003100 Sobic004G018000--Sobic004G344000 Sobic001G462200 Sobic001G462200 Sobic004G018000--Sobic001G462200 Sobic004G018000--Sobic002G393700 Sobic001G116500 Sobic001G116500 Sobic004G018000--Sobic001G116500 Sobic005G160400 Sobic005G160400 Sobic001G412100--Sobic005G160400 Sobic007G165900 Sobic007G165900 Sobic001G412100--Sobic007G165900 Sobic010G265300 Sobic010G265300 Sobic001G412100--Sobic010G265300 Sobic004G257100 Sobic004G257100 Sobic001G412100--Sobic004G257100 Sobic010G156000 Sobic010G156000 Sobic001G412100--Sobic010G156000 Sobic008G087900 Sobic008G087900 Sobic001G412100--Sobic008G087900 Sobic002G301000 Sobic002G301000 Sobic001G412100--Sobic002G301000 Sobic001G031100 Sobic001G031100 Sobic001G412100--Sobic001G031100 Sobic007G095500 Sobic007G095500 Sobic001G412100--Sobic007G095500
Octagon: transcription factors


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