Gene annotation
Transcriptome id Sobic.001G412100.1,Sobic.001G412100.2
Synonym Sb01g038850, PGPS1, PGS1, PGP1
Functional annotation CDP-alcohol phosphatidyltransferase, putative, expressed
UniProt A0A1B6QP03 , C5WP81
Pfam PF01066
Panther DB PTHR14269 PTHR14269:SF20
NCBI CDD KOG1617; CDP-alcohol phosphatidyltransferase/Phosphatidylglycerol-phosphate synthase
KEGG Orthology K00995; pgsA, CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase
Gene Ontology GO:0016780; phosphotransferase activity, for other substituted phosphate groups GO:0016020membrane GO:0008654phospholipid biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G39290 : phosphatidylglycerolphosphate synthase 1
RAP-DB (Rice) LOC_Os03g17520.1 : CDP-alcohol phosphatidyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a001920 , Zm00025a052713
Brachypodium KQK22226
Barley HORVU4Hr1G057680.10 , HORVU4Hr1G057680.8 , HORVU4Hr1G057680.9 , HORVU4Hr1G057680.1 , HORVU4Hr1G057680.2 , HORVU4Hr1G057680.3 , HORVU4Hr1G057680.4 , HORVU4Hr1G057680.5 , HORVU4Hr1G057680.6 , HORVU4Hr1G057680.7
Wheat TraesCS4D02G200300 , TraesCS4A02G104700
Populus -


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cDNA sequences
Sobic.001G412100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
2 Sobic.007G165900 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
3 Sobic.010G265300 AAA-type ATPase family protein, putative, expressed -
4 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
5 Sobic.010G156000 GDSL-like lipase/acylhydrolase, putative, expressed -
6 Sobic.008G087900 expressed protein -
7 Sobic.002G301000 zinc finger, C3HC4 type, domain containing protein, expressed -
8 Sobic.001G031100 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00721: dolichol-phosphate mannosyltransferase
9 Sobic.007G095500 expressed protein -
10 Sobic.008G046500 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
11 Sobic.002G170200 zinc finger family protein, putative, expressed -
12 Sobic.002G393700 expressed protein -
13 Sobic.009G068500 expressed protein -
14 Sobic.001G043800 stage II sporulation protein E, putative, expressed -
15 Sobic.003G176000 lipase family protein, putative, expressed -
16 Sobic.008G067100 phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed K14153: hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase
17 Sobic.008G048300 transcription elongation factor protein, putative, expressed -
18 Sobic.001G250700 expressed protein -
19 Sobic.006G073200 OTU-like cysteine protease family protein, putative, expressed K12655: OTUD5, OTU domain-containing protein 5
20 Sobic.010G024100 tRNA 2-phosphotransferase 1, putative, expressed K10669: TRPT1, 2'-phosphotransferase


Gene co-expression network
sample Sobic001G412100 Sobic001G412100 Sobic005G160400 Sobic005G160400 Sobic001G412100--Sobic005G160400 Sobic007G165900 Sobic007G165900 Sobic001G412100--Sobic007G165900 Sobic010G265300 Sobic010G265300 Sobic001G412100--Sobic010G265300 Sobic004G257100 Sobic004G257100 Sobic001G412100--Sobic004G257100 Sobic010G156000 Sobic010G156000 Sobic001G412100--Sobic010G156000 Sobic008G087900 Sobic008G087900 Sobic001G412100--Sobic008G087900 Sobic002G301000 Sobic002G301000 Sobic001G412100--Sobic002G301000 Sobic001G031100 Sobic001G031100 Sobic001G412100--Sobic001G031100 Sobic007G095500 Sobic007G095500 Sobic001G412100--Sobic007G095500 Sobic009G092400 Sobic009G092400 Sobic005G160400--Sobic009G092400 Sobic007G084100 Sobic007G084100 Sobic005G160400--Sobic007G084100 Sobic010G237900 Sobic010G237900 Sobic005G160400--Sobic010G237900 Sobic010G092300 Sobic010G092300 Sobic005G160400--Sobic010G092300 Sobic002G347000 Sobic002G347000 Sobic005G160400--Sobic002G347000 Sobic001G473600 Sobic001G473600 Sobic005G160400--Sobic001G473600 Sobic005G160400--Sobic010G265300 Sobic006G121300 Sobic006G121300 Sobic005G160400--Sobic006G121300 Sobic001G114500 Sobic001G114500 Sobic005G160400--Sobic001G114500 Sobic007G165900--Sobic004G257100 Sobic006G261400 Sobic006G261400 Sobic007G165900--Sobic006G261400 Sobic008G046500 Sobic008G046500 Sobic007G165900--Sobic008G046500 Sobic004G131800 Sobic004G131800 Sobic007G165900--Sobic004G131800 Sobic006G127600 Sobic006G127600 Sobic007G165900--Sobic006G127600 Sobic001G361300 Sobic001G361300 Sobic007G165900--Sobic001G361300 Sobic001G226700 Sobic001G226700 Sobic007G165900--Sobic001G226700 Sobic001G251100 Sobic001G251100 Sobic007G165900--Sobic001G251100 Sobic010G009800 Sobic010G009800 Sobic007G165900--Sobic010G009800 Sobic001G120500 Sobic001G120500 Sobic010G265300--Sobic001G120500 Sobic010G265300--Sobic005G160400 Sobic010G265300--Sobic010G092300 Sobic005G172500 Sobic005G172500 Sobic010G265300--Sobic005G172500 Sobic008G076800 Sobic008G076800 Sobic010G265300--Sobic008G076800 Sobic004G092500 Sobic004G092500 Sobic010G265300--Sobic004G092500 Sobic010G265300--Sobic007G084100 Sobic010G265300--Sobic004G257100 Sobic010G265300--Sobic001G226700 Sobic004G131300 Sobic004G131300 Sobic004G257100--Sobic004G131300 Sobic004G257100--Sobic001G251100 Sobic004G257100--Sobic004G092500 Sobic006G073200 Sobic006G073200 Sobic004G257100--Sobic006G073200 Sobic004G257100--Sobic005G172500 Sobic008G004600 Sobic008G004600 Sobic004G257100--Sobic008G004600 Sobic001G227400 Sobic001G227400 Sobic004G257100--Sobic001G227400 Sobic008G112800 Sobic008G112800 Sobic004G257100--Sobic008G112800 Sobic001G392300 Sobic001G392300 Sobic004G257100--Sobic001G392300 Sobic002G279700 Sobic002G279700 Sobic010G156000--Sobic002G279700 Sobic002G128900 Sobic002G128900 Sobic010G156000--Sobic002G128900 Sobic010G156000--Sobic001G412100 Sobic006G130800 Sobic006G130800 Sobic010G156000--Sobic006G130800 Sobic010G024100 Sobic010G024100 Sobic010G156000--Sobic010G024100 Sobic001G048100 Sobic001G048100 Sobic010G156000--Sobic001G048100 Sobic003G290100 Sobic003G290100 Sobic010G156000--Sobic003G290100 Sobic010G140600 Sobic010G140600 Sobic010G156000--Sobic010G140600 Sobic010G156000--Sobic010G265300 Sobic006G160100 Sobic006G160100 Sobic008G087900--Sobic006G160100 Sobic001G434200 Sobic001G434200 Sobic008G087900--Sobic001G434200 Sobic005G111900 Sobic005G111900 Sobic008G087900--Sobic005G111900 Sobic007G028500 Sobic007G028500 Sobic008G087900--Sobic007G028500 Sobic002G181600 Sobic002G181600 Sobic008G087900--Sobic002G181600 Sobic002G047500 Sobic002G047500 Sobic008G087900--Sobic002G047500 Sobic006G274800 Sobic006G274800 Sobic008G087900--Sobic006G274800 Sobic006G039400 Sobic006G039400 Sobic008G087900--Sobic006G039400 Sobic008G087900--Sobic001G412100 Sobic008G062400 Sobic008G062400 Sobic002G301000--Sobic008G062400 Sobic002G301000--Sobic001G048100 Sobic002G301000--Sobic010G265300 Sobic002G020400 Sobic002G020400 Sobic002G301000--Sobic002G020400 Sobic003G234900 Sobic003G234900 Sobic002G301000--Sobic003G234900 Sobic002G301000--Sobic001G412100 Sobic010G149200 Sobic010G149200 Sobic002G301000--Sobic010G149200 Sobic004G208600 Sobic004G208600 Sobic002G301000--Sobic004G208600 Sobic001G332500 Sobic001G332500 Sobic002G301000--Sobic001G332500 Sobic009G192000 Sobic009G192000 Sobic001G031100--Sobic009G192000 Sobic003G264200 Sobic003G264200 Sobic001G031100--Sobic003G264200 Sobic001G007000 Sobic001G007000 Sobic001G031100--Sobic001G007000 Sobic004G054100 Sobic004G054100 Sobic001G031100--Sobic004G054100 Sobic002G047700 Sobic002G047700 Sobic001G031100--Sobic002G047700 Sobic009G222500 Sobic009G222500 Sobic001G031100--Sobic009G222500 Sobic001G080700 Sobic001G080700 Sobic001G031100--Sobic001G080700 Sobic009G068500 Sobic009G068500 Sobic001G031100--Sobic009G068500 Sobic010G251000 Sobic010G251000 Sobic001G031100--Sobic010G251000 Sobic008G067100 Sobic008G067100 Sobic007G095500--Sobic008G067100 Sobic007G095500--Sobic004G208600 Sobic004G225600 Sobic004G225600 Sobic007G095500--Sobic004G225600 Sobic001G382800 Sobic001G382800 Sobic007G095500--Sobic001G382800 Sobic002G293600 Sobic002G293600 Sobic007G095500--Sobic002G293600 Sobic002G343400 Sobic002G343400 Sobic007G095500--Sobic002G343400 Sobic008G090900 Sobic008G090900 Sobic007G095500--Sobic008G090900 Sobic001G494500 Sobic001G494500 Sobic007G095500--Sobic001G494500 Sobic006G058100 Sobic006G058100 Sobic007G095500--Sobic006G058100
Octagon: transcription factors


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