Gene annotation
Transcriptome id Sobic.008G048300.1
Synonym Sb08g004100
Functional annotation transcription elongation factor protein, putative, expressed
UniProt C5YSB0
Pfam PF08711
Panther DB PTHR15141
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G09850 : Transcription elongation factor (TFIIS) family protein
RAP-DB (Rice) LOC_Os12g06850.1 : transcription elongation factor protein, putative, expressed
MaizeGDB (Corn) Zm00025a053992
Brachypodium KQJ92118 , KQJ92117 , KQJ92116
Barley HORVU5Hr1G035760.6 , HORVU5Hr1G035760.7 , HORVU5Hr1G035760.4 , HORVU5Hr1G035760.5 , HORVU5Hr1G035760.2 , HORVU5Hr1G035760.3 , HORVU5Hr1G035760.1
Wheat TraesCS5B02G122400 , TraesCS5B02G122400 , TraesCS5D02G130700 , TraesCS5D02G130700 , TraesCS5A02G122300
Populus -


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cDNA sequences
Sobic.008G048300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G283600 NTMC2Type1.2 protein, putative, expressed -
2 Sobic.002G170200 zinc finger family protein, putative, expressed -
3 Sobic.001G428800 vacuolar sorting protein, putative, expressed -
4 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
5 Sobic.004G054100 protein-O-fucosyltransferase 1, putative, expressed -
6 Sobic.001G405600 basic helix-loop-helix, putative, expressed K10863: aprataxin
7 Sobic.002G047500 galactose-1-phosphate uridyl transferase, putative, expressed K00965: galT, UDPglucose--hexose-1-phosphate uridylyltransferase
8 Sobic.010G034100 GTP-binding protein GUF1, putative, expressed -
9 Sobic.007G162100 TENA/THI-4 family protein, putative, expressed -
10 Sobic.001G014200 protein kinase domain containing protein, expressed K08829: male germ cell-associated kinase
11 Sobic.004G130300 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
12 Sobic.006G127600 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
13 Sobic.010G230600 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
14 Sobic.001G434200 AGAP008572-PA, putative, expressed K17796: mitochondrial import inner membrane translocase subunit TIM21
15 Sobic.008G000400 GHMP kinases ATP-binding protein, putative, expressed K16190: glucuronokinase
16 Sobic.001G031100 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00721: dolichol-phosphate mannosyltransferase
17 Sobic.002G218500 lecithine cholesterol acyltransferase, putative, expressed K00679: phospholipid:diacylglycerol acyltransferase
18 Sobic.003G167900 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
19 Sobic.001G412100 CDP-alcohol phosphatidyltransferase, putative, expressed K00995: pgsA, CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase
20 Sobic.008G070800 expressed protein -


Gene co-expression network
sample Sobic008G048300 Sobic008G048300 Sobic001G283600 Sobic001G283600 Sobic008G048300--Sobic001G283600 Sobic002G170200 Sobic002G170200 Sobic008G048300--Sobic002G170200 Sobic001G428800 Sobic001G428800 Sobic008G048300--Sobic001G428800 Sobic006G039400 Sobic006G039400 Sobic008G048300--Sobic006G039400 Sobic004G054100 Sobic004G054100 Sobic008G048300--Sobic004G054100 Sobic001G405600 Sobic001G405600 Sobic008G048300--Sobic001G405600 Sobic002G047500 Sobic002G047500 Sobic008G048300--Sobic002G047500 Sobic010G034100 Sobic010G034100 Sobic008G048300--Sobic010G034100 Sobic007G162100 Sobic007G162100 Sobic008G048300--Sobic007G162100 Sobic001G283600--Sobic007G162100 Sobic001G283600--Sobic010G034100 Sobic001G283600--Sobic008G048300 Sobic001G283600--Sobic002G170200 Sobic006G127600 Sobic006G127600 Sobic001G283600--Sobic006G127600 Sobic001G283600--Sobic006G039400 Sobic008G033500 Sobic008G033500 Sobic001G283600--Sobic008G033500 Sobic006G093300 Sobic006G093300 Sobic001G283600--Sobic006G093300 Sobic008G082500 Sobic008G082500 Sobic001G283600--Sobic008G082500 Sobic004G131800 Sobic004G131800 Sobic002G170200--Sobic004G131800 Sobic002G170200--Sobic001G283600 Sobic003G176000 Sobic003G176000 Sobic002G170200--Sobic003G176000 Sobic005G198000 Sobic005G198000 Sobic002G170200--Sobic005G198000 Sobic006G056700 Sobic006G056700 Sobic002G170200--Sobic006G056700 Sobic002G170200--Sobic006G127600 Sobic002G170200--Sobic006G039400 Sobic002G170200--Sobic007G162100 Sobic006G261400 Sobic006G261400 Sobic002G170200--Sobic006G261400 Sobic001G358500 Sobic001G358500 Sobic001G428800--Sobic001G358500 Sobic001G449900 Sobic001G449900 Sobic001G428800--Sobic001G449900 Sobic010G230600 Sobic010G230600 Sobic001G428800--Sobic010G230600 Sobic004G092500 Sobic004G092500 Sobic001G428800--Sobic004G092500 Sobic010G223300 Sobic010G223300 Sobic001G428800--Sobic010G223300 Sobic001G211900 Sobic001G211900 Sobic001G428800--Sobic001G211900 Sobic001G099900 Sobic001G099900 Sobic001G428800--Sobic001G099900 Sobic010G020400 Sobic010G020400 Sobic001G428800--Sobic010G020400 Sobic009G139300 Sobic009G139300 Sobic001G428800--Sobic009G139300 Sobic006G039400--Sobic006G093300 Sobic006G039400--Sobic001G405600 Sobic003G296900 Sobic003G296900 Sobic006G039400--Sobic003G296900 Sobic001G237600 Sobic001G237600 Sobic006G039400--Sobic001G237600 Sobic003G182300 Sobic003G182300 Sobic006G039400--Sobic003G182300 Sobic006G039400--Sobic010G230600 Sobic006G039400--Sobic007G162100 Sobic007G087000 Sobic007G087000 Sobic006G039400--Sobic007G087000 Sobic006G039400--Sobic001G283600 Sobic001G031100 Sobic001G031100 Sobic004G054100--Sobic001G031100 Sobic003G354600 Sobic003G354600 Sobic004G054100--Sobic003G354600 Sobic009G084000 Sobic009G084000 Sobic004G054100--Sobic009G084000 Sobic004G054100--Sobic010G020400 Sobic002G359400 Sobic002G359400 Sobic004G054100--Sobic002G359400 Sobic001G007000 Sobic001G007000 Sobic004G054100--Sobic001G007000 Sobic002G047700 Sobic002G047700 Sobic004G054100--Sobic002G047700 Sobic006G180000 Sobic006G180000 Sobic004G054100--Sobic006G180000 Sobic001G355800 Sobic001G355800 Sobic004G054100--Sobic001G355800 Sobic007G017800 Sobic007G017800 Sobic001G405600--Sobic007G017800 Sobic001G405600--Sobic010G034100 Sobic007G105900 Sobic007G105900 Sobic001G405600--Sobic007G105900 Sobic010G059500 Sobic010G059500 Sobic001G405600--Sobic010G059500 Sobic003G143200 Sobic003G143200 Sobic001G405600--Sobic003G143200 Sobic006G234700 Sobic006G234700 Sobic001G405600--Sobic006G234700 Sobic001G405600--Sobic006G039400 Sobic001G405600--Sobic003G296900 Sobic001G035200 Sobic001G035200 Sobic001G405600--Sobic001G035200 Sobic007G028500 Sobic007G028500 Sobic002G047500--Sobic007G028500 Sobic008G087900 Sobic008G087900 Sobic002G047500--Sobic008G087900 Sobic001G014200 Sobic001G014200 Sobic002G047500--Sobic001G014200 Sobic003G370500 Sobic003G370500 Sobic002G047500--Sobic003G370500 Sobic002G047500--Sobic006G039400 Sobic002G047500--Sobic008G048300 Sobic007G076400 Sobic007G076400 Sobic002G047500--Sobic007G076400 Sobic002G047500--Sobic007G087000 Sobic002G047500--Sobic004G054100 Sobic010G034100--Sobic010G059500 Sobic010G034100--Sobic001G035200 Sobic009G192300 Sobic009G192300 Sobic010G034100--Sobic009G192300 Sobic010G034100--Sobic001G405600 Sobic009G084900 Sobic009G084900 Sobic010G034100--Sobic009G084900 Sobic010G034100--Sobic001G283600 Sobic001G020000 Sobic001G020000 Sobic010G034100--Sobic001G020000 Sobic006G252900 Sobic006G252900 Sobic010G034100--Sobic006G252900 Sobic002G227500 Sobic002G227500 Sobic010G034100--Sobic002G227500 Sobic007G162100--Sobic006G127600 Sobic007G162100--Sobic001G283600 Sobic007G162100--Sobic009G084900 Sobic001G435400 Sobic001G435400 Sobic007G162100--Sobic001G435400 Sobic003G189600 Sobic003G189600 Sobic007G162100--Sobic003G189600 Sobic007G162100--Sobic010G020400 Sobic003G264100 Sobic003G264100 Sobic007G162100--Sobic003G264100 Sobic007G132100 Sobic007G132100 Sobic007G162100--Sobic007G132100 Sobic007G162100--Sobic009G192300
Octagon: transcription factors


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