Gene annotation
Transcriptome id Sobic.001G283600.2,Sobic.001G283600.1,Sobic.001G283600.3
Synonym SYT1, ATSYTA, Sb01g027900, NTMC2T1.1, SYTA, NTMC2TYPE1.1
Functional annotation NTMC2Type1.2 protein, putative, expressed
UniProt C5WQN9
Pfam PF17047 PF00168
Panther DB PTHR10774 PTHR10774:SF50
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G20990 : synaptotagmin A
RAP-DB (Rice) LOC_Os09g36770.2,LOC_Os09g36770.3,LOC_Os09g36770.1 : NTMC2Type1.2 protein, putative, expressed
MaizeGDB (Corn) Zm00025a049330 , Zm00025a014460 , Zm00025a003541
Brachypodium KQJ91238
Barley HORVU5Hr1G084010.8 , HORVU5Hr1G084010.9 , HORVU5Hr1G084010.1 , HORVU5Hr1G084010.2 , HORVU5Hr1G084010.3 , HORVU5Hr1G084010.4 , HORVU5Hr1G084010.5 , HORVU5Hr1G084010.6 , HORVU5Hr1G084010.7 , HORVU5Hr1G084010.12 , HORVU5Hr1G084010.10 , HORVU5Hr1G084010.11
Wheat TraesCS5B02G330600 , TraesCS5A02G330400 , TraesCS5A02G330400 , TraesCS5A02G330400 , TraesCS5A02G330400 , TraesCS5D02G336200
Populus PNT21186 , PNT21187 , PNT21185 , PNT41765 , PNT41766 , PNT41767


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cDNA sequences
Sobic.001G283600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G162100 TENA/THI-4 family protein, putative, expressed -
2 Sobic.010G034100 GTP-binding protein GUF1, putative, expressed -
3 Sobic.008G048300 transcription elongation factor protein, putative, expressed -
4 Sobic.002G170200 zinc finger family protein, putative, expressed -
5 Sobic.006G127600 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
6 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
7 Sobic.008G033500 nucleolar GTPase, putative, expressed -
8 Sobic.006G093300 expressed protein K02519: infB, translation initiation factor IF-2
9 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
10 Sobic.003G312500 transcription factor jumonji, putative, expressed -
11 Sobic.004G054100 protein-O-fucosyltransferase 1, putative, expressed -
12 Sobic.009G084900 expressed protein -
13 Sobic.008G157200 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
14 Sobic.001G435400 vacuolar ATP synthase 98 kDa subunit, putative, expressed K02154: ATPeV0A, V-type H+-transporting ATPase subunit a
15 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
16 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
17 Sobic.001G434200 AGAP008572-PA, putative, expressed K17796: mitochondrial import inner membrane translocase subunit TIM21
18 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
19 Sobic.001G355800 methyltransferase, putative, expressed -
20 Sobic.005G198000 armadillo/beta-catenin-like repeat family protein, expressed -


Gene co-expression network
sample Sobic001G283600 Sobic001G283600 Sobic007G162100 Sobic007G162100 Sobic001G283600--Sobic007G162100 Sobic010G034100 Sobic010G034100 Sobic001G283600--Sobic010G034100 Sobic008G048300 Sobic008G048300 Sobic001G283600--Sobic008G048300 Sobic002G170200 Sobic002G170200 Sobic001G283600--Sobic002G170200 Sobic006G127600 Sobic006G127600 Sobic001G283600--Sobic006G127600 Sobic006G039400 Sobic006G039400 Sobic001G283600--Sobic006G039400 Sobic008G033500 Sobic008G033500 Sobic001G283600--Sobic008G033500 Sobic006G093300 Sobic006G093300 Sobic001G283600--Sobic006G093300 Sobic008G082500 Sobic008G082500 Sobic001G283600--Sobic008G082500 Sobic007G162100--Sobic006G127600 Sobic007G162100--Sobic001G283600 Sobic009G084900 Sobic009G084900 Sobic007G162100--Sobic009G084900 Sobic001G435400 Sobic001G435400 Sobic007G162100--Sobic001G435400 Sobic003G189600 Sobic003G189600 Sobic007G162100--Sobic003G189600 Sobic010G020400 Sobic010G020400 Sobic007G162100--Sobic010G020400 Sobic003G264100 Sobic003G264100 Sobic007G162100--Sobic003G264100 Sobic007G132100 Sobic007G132100 Sobic007G162100--Sobic007G132100 Sobic009G192300 Sobic009G192300 Sobic007G162100--Sobic009G192300 Sobic010G059500 Sobic010G059500 Sobic010G034100--Sobic010G059500 Sobic001G035200 Sobic001G035200 Sobic010G034100--Sobic001G035200 Sobic010G034100--Sobic009G192300 Sobic001G405600 Sobic001G405600 Sobic010G034100--Sobic001G405600 Sobic010G034100--Sobic009G084900 Sobic010G034100--Sobic001G283600 Sobic001G020000 Sobic001G020000 Sobic010G034100--Sobic001G020000 Sobic006G252900 Sobic006G252900 Sobic010G034100--Sobic006G252900 Sobic002G227500 Sobic002G227500 Sobic010G034100--Sobic002G227500 Sobic008G048300--Sobic001G283600 Sobic008G048300--Sobic002G170200 Sobic001G428800 Sobic001G428800 Sobic008G048300--Sobic001G428800 Sobic008G048300--Sobic006G039400 Sobic004G054100 Sobic004G054100 Sobic008G048300--Sobic004G054100 Sobic008G048300--Sobic001G405600 Sobic002G047500 Sobic002G047500 Sobic008G048300--Sobic002G047500 Sobic008G048300--Sobic010G034100 Sobic008G048300--Sobic007G162100 Sobic004G131800 Sobic004G131800 Sobic002G170200--Sobic004G131800 Sobic002G170200--Sobic001G283600 Sobic003G176000 Sobic003G176000 Sobic002G170200--Sobic003G176000 Sobic005G198000 Sobic005G198000 Sobic002G170200--Sobic005G198000 Sobic006G056700 Sobic006G056700 Sobic002G170200--Sobic006G056700 Sobic002G170200--Sobic006G127600 Sobic002G170200--Sobic006G039400 Sobic002G170200--Sobic007G162100 Sobic006G261400 Sobic006G261400 Sobic002G170200--Sobic006G261400 Sobic006G127600--Sobic007G162100 Sobic006G127600--Sobic006G261400 Sobic008G157200 Sobic008G157200 Sobic006G127600--Sobic008G157200 Sobic009G256900 Sobic009G256900 Sobic006G127600--Sobic009G256900 Sobic010G000800 Sobic010G000800 Sobic006G127600--Sobic010G000800 Sobic001G251100 Sobic001G251100 Sobic006G127600--Sobic001G251100 Sobic001G333100 Sobic001G333100 Sobic006G127600--Sobic001G333100 Sobic003G379200 Sobic003G379200 Sobic006G127600--Sobic003G379200 Sobic006G131000 Sobic006G131000 Sobic006G127600--Sobic006G131000 Sobic006G039400--Sobic006G093300 Sobic006G039400--Sobic001G405600 Sobic003G296900 Sobic003G296900 Sobic006G039400--Sobic003G296900 Sobic001G237600 Sobic001G237600 Sobic006G039400--Sobic001G237600 Sobic003G182300 Sobic003G182300 Sobic006G039400--Sobic003G182300 Sobic010G230600 Sobic010G230600 Sobic006G039400--Sobic010G230600 Sobic006G039400--Sobic007G162100 Sobic007G087000 Sobic007G087000 Sobic006G039400--Sobic007G087000 Sobic006G039400--Sobic001G283600 Sobic008G033500--Sobic010G020400 Sobic001G014800 Sobic001G014800 Sobic008G033500--Sobic001G014800 Sobic008G033500--Sobic001G333100 Sobic002G020700 Sobic002G020700 Sobic008G033500--Sobic002G020700 Sobic008G033500--Sobic007G162100 Sobic008G033500--Sobic006G127600 Sobic003G422900 Sobic003G422900 Sobic008G033500--Sobic003G422900 Sobic009G068500 Sobic009G068500 Sobic008G033500--Sobic009G068500 Sobic001G193300 Sobic001G193300 Sobic008G033500--Sobic001G193300 Sobic006G093300--Sobic006G039400 Sobic001G434200 Sobic001G434200 Sobic006G093300--Sobic001G434200 Sobic008G185800 Sobic008G185800 Sobic006G093300--Sobic008G185800 Sobic003G241700 Sobic003G241700 Sobic006G093300--Sobic003G241700 Sobic006G093300--Sobic001G283600 Sobic006G093300--Sobic001G333100 Sobic003G308500 Sobic003G308500 Sobic006G093300--Sobic003G308500 Sobic006G093300--Sobic003G296900 Sobic006G184900 Sobic006G184900 Sobic006G093300--Sobic006G184900 Sobic008G082500--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic008G082500--Sobic010G185400 Sobic010G206300 Sobic010G206300 Sobic008G082500--Sobic010G206300 Sobic006G077200 Sobic006G077200 Sobic008G082500--Sobic006G077200 Sobic008G082500--Sobic010G059500 Sobic001G493200 Sobic001G493200 Sobic008G082500--Sobic001G493200 Sobic008G082500--Sobic002G020700 Sobic001G145400 Sobic001G145400 Sobic008G082500--Sobic001G145400 Sobic004G023100 Sobic004G023100 Sobic008G082500--Sobic004G023100
Octagon: transcription factors


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