Gene annotation
Transcriptome id Sobic.008G033500.1
Synonym Sb08g002880
Functional annotation nucleolar GTPase, putative, expressed
UniProt A0A1B6PB13
Pfam -
Panther DB PTHR35701
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G54920 : -
RAP-DB (Rice) LOC_Os11g05100.1 : nucleolar GTPase, putative, expressed
MaizeGDB (Corn) Zm00025a031956 , Zm00025a045356 , Zm00025a029031
Brachypodium PNT65461 , KQJ92313
Barley HORVU5Hr1G044160.13 , HORVU5Hr1G044160.10 , HORVU5Hr1G041100.5 , HORVU5Hr1G041100.4 , HORVU5Hr1G041100.1 , HORVU5Hr1G041100.3 , HORVU5Hr1G041100.2 , HORVU5Hr1G041100.9 , HORVU5Hr1G041100.8 , HORVU5Hr1G041100.10 , HORVU5Hr1G044160.8 , HORVU5Hr1G044160.9 , HORVU5Hr1G044160.4 , HORVU5Hr1G044160.5 , HORVU5Hr1G044160.6 , HORVU5Hr1G044160.7 , HORVU5Hr1G044160.1 , HORVU5Hr1G044160.2 , HORVU5Hr1G044160.3 , HORVU5Hr1G044160.12 , HORVU5Hr1G044160.11 , HORVU5Hr1G041100.6 , HORVU5Hr1G041100.7
Wheat TraesCS5D02G138900 , TraesCS5B02G131100 , TraesCS5B02G131100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
2 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
3 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
4 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
5 Sobic.007G162100 TENA/THI-4 family protein, putative, expressed -
6 Sobic.006G127600 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
7 Sobic.003G422900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
8 Sobic.009G068500 expressed protein -
9 Sobic.001G193300 TBC domain containing protein, expressed -
10 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
11 Sobic.001G283600 NTMC2Type1.2 protein, putative, expressed -
12 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
13 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
14 Sobic.010G223300 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
15 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
16 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
17 Sobic.003G164200 cullin, putative, expressed K03347: CUL1, cullin 1
18 Sobic.002G359400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
19 Sobic.008G135200 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1
20 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha


Gene co-expression network
sample Sobic008G033500 Sobic008G033500 Sobic010G020400 Sobic010G020400 Sobic008G033500--Sobic010G020400 Sobic001G014800 Sobic001G014800 Sobic008G033500--Sobic001G014800 Sobic001G333100 Sobic001G333100 Sobic008G033500--Sobic001G333100 Sobic002G020700 Sobic002G020700 Sobic008G033500--Sobic002G020700 Sobic007G162100 Sobic007G162100 Sobic008G033500--Sobic007G162100 Sobic006G127600 Sobic006G127600 Sobic008G033500--Sobic006G127600 Sobic003G422900 Sobic003G422900 Sobic008G033500--Sobic003G422900 Sobic009G068500 Sobic009G068500 Sobic008G033500--Sobic009G068500 Sobic001G193300 Sobic001G193300 Sobic008G033500--Sobic001G193300 Sobic010G020400--Sobic002G020700 Sobic001G049400 Sobic001G049400 Sobic010G020400--Sobic001G049400 Sobic003G338500 Sobic003G338500 Sobic010G020400--Sobic003G338500 Sobic010G020400--Sobic001G014800 Sobic002G008800 Sobic002G008800 Sobic010G020400--Sobic002G008800 Sobic008G055900 Sobic008G055900 Sobic010G020400--Sobic008G055900 Sobic010G020400--Sobic008G033500 Sobic010G020400--Sobic001G333100 Sobic010G223300 Sobic010G223300 Sobic010G020400--Sobic010G223300 Sobic001G014800--Sobic010G020400 Sobic009G084000 Sobic009G084000 Sobic001G014800--Sobic009G084000 Sobic001G014800--Sobic008G033500 Sobic001G014800--Sobic001G333100 Sobic009G192000 Sobic009G192000 Sobic001G014800--Sobic009G192000 Sobic002G047700 Sobic002G047700 Sobic001G014800--Sobic002G047700 Sobic006G180000 Sobic006G180000 Sobic001G014800--Sobic006G180000 Sobic006G201800 Sobic006G201800 Sobic001G014800--Sobic006G201800 Sobic002G263600 Sobic002G263600 Sobic001G014800--Sobic002G263600 Sobic003G264100 Sobic003G264100 Sobic001G333100--Sobic003G264100 Sobic001G333100--Sobic002G020700 Sobic003G221400 Sobic003G221400 Sobic001G333100--Sobic003G221400 Sobic001G192000 Sobic001G192000 Sobic001G333100--Sobic001G192000 Sobic001G333100--Sobic010G020400 Sobic002G142900 Sobic002G142900 Sobic001G333100--Sobic002G142900 Sobic001G333100--Sobic010G223300 Sobic001G251100 Sobic001G251100 Sobic001G333100--Sobic001G251100 Sobic001G333100--Sobic008G033500 Sobic002G020700--Sobic010G020400 Sobic008G085700 Sobic008G085700 Sobic002G020700--Sobic008G085700 Sobic002G020700--Sobic008G055900 Sobic002G020700--Sobic001G333100 Sobic002G020700--Sobic010G223300 Sobic001G449900 Sobic001G449900 Sobic002G020700--Sobic001G449900 Sobic004G039600 Sobic004G039600 Sobic002G020700--Sobic004G039600 Sobic008G082500 Sobic008G082500 Sobic002G020700--Sobic008G082500 Sobic007G054800 Sobic007G054800 Sobic002G020700--Sobic007G054800 Sobic007G162100--Sobic006G127600 Sobic001G283600 Sobic001G283600 Sobic007G162100--Sobic001G283600 Sobic009G084900 Sobic009G084900 Sobic007G162100--Sobic009G084900 Sobic001G435400 Sobic001G435400 Sobic007G162100--Sobic001G435400 Sobic003G189600 Sobic003G189600 Sobic007G162100--Sobic003G189600 Sobic007G162100--Sobic010G020400 Sobic007G162100--Sobic003G264100 Sobic007G132100 Sobic007G132100 Sobic007G162100--Sobic007G132100 Sobic009G192300 Sobic009G192300 Sobic007G162100--Sobic009G192300 Sobic006G127600--Sobic007G162100 Sobic006G261400 Sobic006G261400 Sobic006G127600--Sobic006G261400 Sobic008G157200 Sobic008G157200 Sobic006G127600--Sobic008G157200 Sobic009G256900 Sobic009G256900 Sobic006G127600--Sobic009G256900 Sobic010G000800 Sobic010G000800 Sobic006G127600--Sobic010G000800 Sobic006G127600--Sobic001G251100 Sobic006G127600--Sobic001G333100 Sobic003G379200 Sobic003G379200 Sobic006G127600--Sobic003G379200 Sobic006G131000 Sobic006G131000 Sobic006G127600--Sobic006G131000 Sobic003G422900--Sobic010G020400 Sobic003G155900 Sobic003G155900 Sobic003G422900--Sobic003G155900 Sobic002G303600 Sobic002G303600 Sobic003G422900--Sobic002G303600 Sobic009G164000 Sobic009G164000 Sobic003G422900--Sobic009G164000 Sobic009G044800 Sobic009G044800 Sobic003G422900--Sobic009G044800 Sobic001G392300 Sobic001G392300 Sobic003G422900--Sobic001G392300 Sobic004G257100 Sobic004G257100 Sobic003G422900--Sobic004G257100 Sobic002G256200 Sobic002G256200 Sobic003G422900--Sobic002G256200 Sobic003G422900--Sobic008G082500 Sobic001G007000 Sobic001G007000 Sobic009G068500--Sobic001G007000 Sobic009G068500--Sobic001G193300 Sobic009G068500--Sobic003G264100 Sobic007G093800 Sobic007G093800 Sobic009G068500--Sobic007G093800 Sobic003G006300 Sobic003G006300 Sobic009G068500--Sobic003G006300 Sobic003G365300 Sobic003G365300 Sobic009G068500--Sobic003G365300 Sobic002G359400 Sobic002G359400 Sobic009G068500--Sobic002G359400 Sobic009G068500--Sobic010G020400 Sobic010G251000 Sobic010G251000 Sobic009G068500--Sobic010G251000 Sobic001G193300--Sobic009G068500 Sobic008G089100 Sobic008G089100 Sobic001G193300--Sobic008G089100 Sobic001G193300--Sobic004G257100 Sobic001G193300--Sobic002G359400 Sobic001G193300--Sobic008G033500 Sobic004G202500 Sobic004G202500 Sobic001G193300--Sobic004G202500 Sobic003G176000 Sobic003G176000 Sobic001G193300--Sobic003G176000 Sobic001G193300--Sobic001G007000 Sobic008G124900 Sobic008G124900 Sobic001G193300--Sobic008G124900
Octagon: transcription factors


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