Gene annotation
Transcriptome id Sobic.003G264100.1
Synonym ATXPB1, Sb03g031750, XPB1
Functional annotation -
UniProt C5XGX0
Pfam PF13625 PF04851 PF00271
Panther DB PTHR11274:SF0 PTHR11274
NCBI CDD -
KEGG Orthology K10843; ERCC3, DNA excision repair protein ERCC-3
Gene Ontology GO:0003677; DNA binding GO:0005524ATP binding GO:0016787hydrolase activity


Orthologs (automatic annotation)
TAIR AT5G41360 : homolog of Xeroderma pigmentosum complementation group B 2
RAP-DB (Rice) LOC_Os01g49680.1 : DNA repair helicase XPB2, putative, expressed
MaizeGDB (Corn) Zm00025a027949
Brachypodium KQK09270
Barley HORVU3Hr1G064300.4 , HORVU3Hr1G064300.1 , HORVU3Hr1G064300.29 , HORVU3Hr1G064300.28 , HORVU3Hr1G064300.27 , HORVU3Hr1G064300.26 , HORVU3Hr1G064300.25 , HORVU3Hr1G064300.24 , HORVU3Hr1G064300.23 , HORVU3Hr1G064300.22 , HORVU3Hr1G064300.21 , HORVU3Hr1G064300.20 , HORVU3Hr1G064300.2 , HORVU3Hr1G064300.30 , HORVU3Hr1G064300.3 , HORVU3Hr1G064300.5 , HORVU3Hr1G064300.6 , HORVU3Hr1G064300.7 , HORVU3Hr1G064300.9 , HORVU3Hr1G064300.16 , HORVU3Hr1G064300.17 , HORVU3Hr1G064300.14 , HORVU3Hr1G064300.15 , HORVU3Hr1G064300.12 , HORVU3Hr1G064300.13 , HORVU3Hr1G064300.10 , HORVU3Hr1G064300.11 , HORVU3Hr1G064300.18 , HORVU3Hr1G064300.19 , HORVU3Hr1G064300.8
Wheat TraesCS3B02G294400 , TraesCS3A02G261300 , TraesCS3A02G261300 , TraesCS3D02G261400
Populus -


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cDNA sequences
Sobic.003G264100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
2 Sobic.009G109925 - -
3 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase
4 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.006G180000 syntaxin-18, putative, expressed K08492: syntaxin 18
6 Sobic.009G068500 expressed protein -
7 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
8 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
9 Sobic.003G195000 OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed K08955: ATP-dependent metalloprotease
10 Sobic.006G260500 expressed protein -
11 Sobic.003G311900 CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed -
12 Sobic.007G093800 expressed protein -
13 Sobic.009G131300 cation-transporting ATPase, putative, expressed K14950: ATP13A1, manganese-transporting P-type ATPase
14 Sobic.002G303600 -(PubMedID : 29147737)@RIN3, putative, expressed K10636: AMFR, autocrine motility factor receptor
15 Sobic.003G110000 TBC domain containing protein, expressed -
16 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
17 Sobic.008G088872 - -
18 Sobic.007G162100 TENA/THI-4 family protein, putative, expressed -
19 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
20 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN


Gene co-expression network
sample Sobic003G264100 Sobic003G264100 Sobic001G333100 Sobic001G333100 Sobic003G264100--Sobic001G333100 Sobic009G109925 Sobic009G109925 Sobic003G264100--Sobic009G109925 Sobic006G196300 Sobic006G196300 Sobic003G264100--Sobic006G196300 Sobic002G311100 Sobic002G311100 Sobic003G264100--Sobic002G311100 Sobic006G180000 Sobic006G180000 Sobic003G264100--Sobic006G180000 Sobic009G068500 Sobic009G068500 Sobic003G264100--Sobic009G068500 Sobic001G227400 Sobic001G227400 Sobic003G264100--Sobic001G227400 Sobic001G192000 Sobic001G192000 Sobic003G264100--Sobic001G192000 Sobic003G195000 Sobic003G195000 Sobic003G264100--Sobic003G195000 Sobic001G333100--Sobic003G264100 Sobic002G020700 Sobic002G020700 Sobic001G333100--Sobic002G020700 Sobic003G221400 Sobic003G221400 Sobic001G333100--Sobic003G221400 Sobic001G333100--Sobic001G192000 Sobic010G020400 Sobic010G020400 Sobic001G333100--Sobic010G020400 Sobic002G142900 Sobic002G142900 Sobic001G333100--Sobic002G142900 Sobic010G223300 Sobic010G223300 Sobic001G333100--Sobic010G223300 Sobic001G251100 Sobic001G251100 Sobic001G333100--Sobic001G251100 Sobic008G033500 Sobic008G033500 Sobic001G333100--Sobic008G033500 Sobic009G110000 Sobic009G110000 Sobic009G109925--Sobic009G110000 Sobic009G109925--Sobic003G264100 Sobic001G128300 Sobic001G128300 Sobic009G109925--Sobic001G128300 Sobic001G441400 Sobic001G441400 Sobic009G109925--Sobic001G441400 Sobic009G131300 Sobic009G131300 Sobic009G109925--Sobic009G131300 Sobic008G098900 Sobic008G098900 Sobic009G109925--Sobic008G098900 Sobic001G370900 Sobic001G370900 Sobic009G109925--Sobic001G370900 Sobic009G143700 Sobic009G143700 Sobic009G109925--Sobic009G143700 Sobic001G251200 Sobic001G251200 Sobic009G109925--Sobic001G251200 Sobic006G196300--Sobic003G264100 Sobic002G405400 Sobic002G405400 Sobic006G196300--Sobic002G405400 Sobic001G455800 Sobic001G455800 Sobic006G196300--Sobic001G455800 Sobic006G196300--Sobic002G142900 Sobic006G196300--Sobic010G020400 Sobic006G196300--Sobic001G333100 Sobic006G196300--Sobic001G227400 Sobic004G241900 Sobic004G241900 Sobic006G196300--Sobic004G241900 Sobic002G303600 Sobic002G303600 Sobic006G196300--Sobic002G303600 Sobic010G147100 Sobic010G147100 Sobic002G311100--Sobic010G147100 Sobic009G074400 Sobic009G074400 Sobic002G311100--Sobic009G074400 Sobic010G013200 Sobic010G013200 Sobic002G311100--Sobic010G013200 Sobic002G311100--Sobic003G264100 Sobic010G131900 Sobic010G131900 Sobic002G311100--Sobic010G131900 Sobic010G074300 Sobic010G074300 Sobic002G311100--Sobic010G074300 Sobic002G311100--Sobic009G143700 Sobic009G201300 Sobic009G201300 Sobic002G311100--Sobic009G201300 Sobic002G311100--Sobic003G195000 Sobic006G180000--Sobic002G303600 Sobic002G047700 Sobic002G047700 Sobic006G180000--Sobic002G047700 Sobic006G180000--Sobic003G264100 Sobic006G180000--Sobic010G223300 Sobic009G092400 Sobic009G092400 Sobic006G180000--Sobic009G092400 Sobic001G007000 Sobic001G007000 Sobic006G180000--Sobic001G007000 Sobic006G180000--Sobic010G020400 Sobic004G092500 Sobic004G092500 Sobic006G180000--Sobic004G092500 Sobic004G028100 Sobic004G028100 Sobic006G180000--Sobic004G028100 Sobic009G068500--Sobic001G007000 Sobic001G193300 Sobic001G193300 Sobic009G068500--Sobic001G193300 Sobic009G068500--Sobic003G264100 Sobic007G093800 Sobic007G093800 Sobic009G068500--Sobic007G093800 Sobic003G006300 Sobic003G006300 Sobic009G068500--Sobic003G006300 Sobic003G365300 Sobic003G365300 Sobic009G068500--Sobic003G365300 Sobic002G359400 Sobic002G359400 Sobic009G068500--Sobic002G359400 Sobic009G068500--Sobic010G020400 Sobic010G251000 Sobic010G251000 Sobic009G068500--Sobic010G251000 Sobic009G044800 Sobic009G044800 Sobic001G227400--Sobic009G044800 Sobic007G218000 Sobic007G218000 Sobic001G227400--Sobic007G218000 Sobic001G493200 Sobic001G493200 Sobic001G227400--Sobic001G493200 Sobic001G493700 Sobic001G493700 Sobic001G227400--Sobic001G493700 Sobic006G088200 Sobic006G088200 Sobic001G227400--Sobic006G088200 Sobic009G084900 Sobic009G084900 Sobic001G227400--Sobic009G084900 Sobic001G227400--Sobic003G195000 Sobic005G172500 Sobic005G172500 Sobic001G227400--Sobic005G172500 Sobic001G289800 Sobic001G289800 Sobic001G227400--Sobic001G289800 Sobic002G275700 Sobic002G275700 Sobic001G192000--Sobic002G275700 Sobic009G255700 Sobic009G255700 Sobic001G192000--Sobic009G255700 Sobic005G162500 Sobic005G162500 Sobic001G192000--Sobic005G162500 Sobic008G088872 Sobic008G088872 Sobic001G192000--Sobic008G088872 Sobic001G192000--Sobic001G333100 Sobic001G192000--Sobic003G195000 Sobic002G146300 Sobic002G146300 Sobic001G192000--Sobic002G146300 Sobic001G192000--Sobic001G370900 Sobic001G192000--Sobic003G221400 Sobic003G195000--Sobic001G289800 Sobic001G194200 Sobic001G194200 Sobic003G195000--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic003G195000--Sobic009G053900 Sobic003G195000--Sobic002G146300 Sobic003G195000--Sobic002G275700 Sobic005G001000 Sobic005G001000 Sobic003G195000--Sobic005G001000 Sobic003G195000--Sobic002G142900 Sobic001G289600 Sobic001G289600 Sobic003G195000--Sobic001G289600 Sobic003G195000--Sobic001G192000
Octagon: transcription factors


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