Gene annotation
Transcriptome id Sobic.003G311900.1,Sobic.003G311900.2,Sobic.003G311900.3
Synonym Sb03g036000
Functional annotation CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed
UniProt A0A1W0VZQ9 , A0A1W0VZS6 , A0A1B6Q6D5
Pfam PF00069
Panther DB PTHR11909 PTHR11909:SF153
NCBI CDD KOG1164; Casein kinase (serine/threonine/tyrosine protein kinase)
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT3G03940 : Protein kinase family protein
RAP-DB (Rice) LOC_Os01g56580.1 : CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed
MaizeGDB (Corn) Zm00025a025053 , Zm00025a009758 , Zm00025a014313 , Zm00025a015168 , Zm00025a039918 , Zm00025a013970 , Zm00025a045115
Brachypodium KQK09983 , KQK09982
Barley HORVU3Hr1G075540.8 , HORVU3Hr1G075540.9 , HORVU3Hr1G075540.1 , HORVU3Hr1G075540.2 , HORVU3Hr1G075540.3 , HORVU3Hr1G075540.4 , HORVU3Hr1G075540.5 , HORVU3Hr1G075540.6 , HORVU3Hr1G075540.7 , HORVU3Hr1G075540.13 , HORVU3Hr1G075540.11 , HORVU3Hr1G075540.18 , HORVU3Hr1G075540.12 , HORVU3Hr1G075540.10 , HORVU3Hr1G075540.16 , HORVU3Hr1G075540.17 , HORVU3Hr1G075540.14 , HORVU3Hr1G075540.15 , HORVU3Hr1G075540.19 , HORVU3Hr1G075540.20 , HORVU0Hr1G006950.2 , HORVU0Hr1G006950.3 , HORVU0Hr1G006950.1
Wheat TraesCS3B02G342600 , TraesCS3B02G342600 , TraesCS3B02G342600 , TraesCS3A02G323100 , TraesCS3A02G323100 , TraesCS3A02G323100 , TraesCS3D02G308400 , TraesCS3D02G308400 , TraesCS3D02G308400 , TraesCS3D02G308400
Populus PNT33379 , PNT33383 , PNT33382 , PNT33381 , PNT33380 , PNT33384


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G244900 expressed protein -
2 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
3 Sobic.002G167500 expressed protein -
4 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
5 Sobic.002G275700 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
6 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
7 Sobic.005G026000 expressed protein -
8 Sobic.001G355800 methyltransferase, putative, expressed -
9 Sobic.001G136800 dual specificity protein phosphatase, putative, expressed -
10 Sobic.005G187300 lipin, N-terminal conserved region family protein, expressed K15728: phosphatidate phosphatase LPIN
11 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
12 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
13 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
14 Sobic.002G131500 ABC transporter, ATP-binding protein, putative, expressed -
15 Sobic.009G201300 - -
16 Sobic.003G241700 SET domain containing protein, expressed -
17 Sobic.010G226000 expressed protein -
18 Sobic.006G127600 signal peptide peptidase-like 2B, putative, expressed K09597: signal peptide peptidase-like 2B
19 Sobic.003G340600 VHS and GAT domain containing protein, expressed -
20 Sobic.002G383800 GTP-binding protein, putative, expressed K06944: uncharacterized protein


Gene co-expression network
sample Sobic003G311900 Sobic003G311900 Sobic004G244900 Sobic004G244900 Sobic003G311900--Sobic004G244900 Sobic003G264100 Sobic003G264100 Sobic003G311900--Sobic003G264100 Sobic002G167500 Sobic002G167500 Sobic003G311900--Sobic002G167500 Sobic001G192000 Sobic001G192000 Sobic003G311900--Sobic001G192000 Sobic002G275700 Sobic002G275700 Sobic003G311900--Sobic002G275700 Sobic004G001500 Sobic004G001500 Sobic003G311900--Sobic004G001500 Sobic005G026000 Sobic005G026000 Sobic003G311900--Sobic005G026000 Sobic001G355800 Sobic001G355800 Sobic003G311900--Sobic001G355800 Sobic001G136800 Sobic001G136800 Sobic003G311900--Sobic001G136800 Sobic001G457800 Sobic001G457800 Sobic004G244900--Sobic001G457800 Sobic004G334300 Sobic004G334300 Sobic004G244900--Sobic004G334300 Sobic003G119600 Sobic003G119600 Sobic004G244900--Sobic003G119600 Sobic003G155100 Sobic003G155100 Sobic004G244900--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic004G244900--Sobic008G001200 Sobic004G356700 Sobic004G356700 Sobic004G244900--Sobic004G356700 Sobic009G201300 Sobic009G201300 Sobic004G244900--Sobic009G201300 Sobic004G244900--Sobic002G275700 Sobic003G168100 Sobic003G168100 Sobic004G244900--Sobic003G168100 Sobic001G333100 Sobic001G333100 Sobic003G264100--Sobic001G333100 Sobic009G109925 Sobic009G109925 Sobic003G264100--Sobic009G109925 Sobic006G196300 Sobic006G196300 Sobic003G264100--Sobic006G196300 Sobic002G311100 Sobic002G311100 Sobic003G264100--Sobic002G311100 Sobic006G180000 Sobic006G180000 Sobic003G264100--Sobic006G180000 Sobic009G068500 Sobic009G068500 Sobic003G264100--Sobic009G068500 Sobic001G227400 Sobic001G227400 Sobic003G264100--Sobic001G227400 Sobic003G264100--Sobic001G192000 Sobic003G195000 Sobic003G195000 Sobic003G264100--Sobic003G195000 Sobic003G340600 Sobic003G340600 Sobic002G167500--Sobic003G340600 Sobic008G172300 Sobic008G172300 Sobic002G167500--Sobic008G172300 Sobic002G167500--Sobic003G311900 Sobic002G131500 Sobic002G131500 Sobic002G167500--Sobic002G131500 Sobic002G167500--Sobic005G026000 Sobic004G026500 Sobic004G026500 Sobic002G167500--Sobic004G026500 Sobic010G265300 Sobic010G265300 Sobic002G167500--Sobic010G265300 Sobic001G300100 Sobic001G300100 Sobic002G167500--Sobic001G300100 Sobic002G167500--Sobic001G136800 Sobic001G192000--Sobic002G275700 Sobic009G255700 Sobic009G255700 Sobic001G192000--Sobic009G255700 Sobic005G162500 Sobic005G162500 Sobic001G192000--Sobic005G162500 Sobic008G088872 Sobic008G088872 Sobic001G192000--Sobic008G088872 Sobic001G192000--Sobic001G333100 Sobic001G192000--Sobic003G195000 Sobic002G146300 Sobic002G146300 Sobic001G192000--Sobic002G146300 Sobic001G370900 Sobic001G370900 Sobic001G192000--Sobic001G370900 Sobic003G221400 Sobic003G221400 Sobic001G192000--Sobic003G221400 Sobic002G275700--Sobic001G192000 Sobic001G194200 Sobic001G194200 Sobic002G275700--Sobic001G194200 Sobic007G103100 Sobic007G103100 Sobic002G275700--Sobic007G103100 Sobic006G041600 Sobic006G041600 Sobic002G275700--Sobic006G041600 Sobic002G275700--Sobic009G255700 Sobic002G275700--Sobic003G195000 Sobic001G289800 Sobic001G289800 Sobic002G275700--Sobic001G289800 Sobic001G527800 Sobic001G527800 Sobic002G275700--Sobic001G527800 Sobic003G196300 Sobic003G196300 Sobic002G275700--Sobic003G196300 Sobic004G001500--Sobic002G146300 Sobic003G043200 Sobic003G043200 Sobic004G001500--Sobic003G043200 Sobic005G187300 Sobic005G187300 Sobic004G001500--Sobic005G187300 Sobic004G001500--Sobic001G370900 Sobic004G001500--Sobic001G457800 Sobic009G256400 Sobic009G256400 Sobic004G001500--Sobic009G256400 Sobic003G166750 Sobic003G166750 Sobic004G001500--Sobic003G166750 Sobic004G001500--Sobic004G356700 Sobic004G001500--Sobic001G527800 Sobic010G100800 Sobic010G100800 Sobic005G026000--Sobic010G100800 Sobic005G026000--Sobic003G311900 Sobic004G262700 Sobic004G262700 Sobic005G026000--Sobic004G262700 Sobic005G026000--Sobic002G167500 Sobic004G344000 Sobic004G344000 Sobic005G026000--Sobic004G344000 Sobic001G124100 Sobic001G124100 Sobic005G026000--Sobic001G124100 Sobic003G264800 Sobic003G264800 Sobic005G026000--Sobic003G264800 Sobic001G049500 Sobic001G049500 Sobic005G026000--Sobic001G049500 Sobic003G107500 Sobic003G107500 Sobic005G026000--Sobic003G107500 Sobic002G131200 Sobic002G131200 Sobic001G355800--Sobic002G131200 Sobic001G355800--Sobic001G192000 Sobic001G355800--Sobic001G333100 Sobic001G355800--Sobic009G201300 Sobic003G354600 Sobic003G354600 Sobic001G355800--Sobic003G354600 Sobic002G305000 Sobic002G305000 Sobic001G355800--Sobic002G305000 Sobic001G355800--Sobic003G311900 Sobic001G355800--Sobic003G119600 Sobic002G091600 Sobic002G091600 Sobic001G355800--Sobic002G091600 Sobic001G136800--Sobic003G354600 Sobic005G199400 Sobic005G199400 Sobic001G136800--Sobic005G199400 Sobic010G125500 Sobic010G125500 Sobic001G136800--Sobic010G125500 Sobic001G136800--Sobic003G264800 Sobic001G136800--Sobic004G244900 Sobic001G136800--Sobic009G201300 Sobic005G106600 Sobic005G106600 Sobic001G136800--Sobic005G106600 Sobic001G136800--Sobic003G311900 Sobic001G136800--Sobic002G091600
Octagon: transcription factors


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