Gene annotation
Transcriptome id Sobic.003G107500.1,Sobic.003G107500.2,Sobic.003G107500.3
Synonym CHR8, Sb03g009030
Functional annotation expressed protein
UniProt C5XF35 , A0A1W0VWP7 , A0A1W0VWU4
Pfam PF00271 PF00176
Panther DB PTHR10799 PTHR10799:SF624
NCBI CDD KOG4439; RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily KOG1001Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
KEGG Orthology K10841; ERCC6, CSB, DNA excision repair protein ERCC-6
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT2G18760 : chromatin remodeling 8
RAP-DB (Rice) LOC_Os01g01312.1 : retrotransposon protein, putative, Ty1-copia subclass, expressed
MaizeGDB (Corn) Zm00025a023853
Brachypodium KQK02776
Barley HORVU3Hr1G014660.1 , HORVU3Hr1G014620.1 , HORVU3Hr1G014620.2 , HORVU3Hr1G014660.2 , HORVU3Hr1G014630.2 , HORVU3Hr1G014630.1
Wheat TraesCS3B02G097000 , TraesCS3B02G097000 , TraesCS3B02G097000 , TraesCS3D02G082200 , TraesCS3D02G082200 , TraesCS3D02G082200 , TraesCS3A02G081900 , TraesCS3A02G081900 , TraesCS3A02G081900 , TraesCS3A02G081900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
2 Sobic.002G043800 regulator of chromosome condensation/beta-lactamase-inhibitor protein II, putative, expressed -
3 Sobic.002G383600 zinc finger, C3HC4 type domain containing protein, expressed K12169: KPC1, Kip1 ubiquitination-promoting complex protein 1
4 Sobic.001G310100 WD domain, G-beta repeat domain containing protein, expressed K11804: DDB1- and CUL4-associated factor 8
5 Sobic.004G146600 lipase, putative, expressed -
6 Sobic.003G298200 dehydrogenase, putative, expressed -
7 Sobic.003G373500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
8 Sobic.005G187300 lipin, N-terminal conserved region family protein, expressed K15728: phosphatidate phosphatase LPIN
9 Sobic.010G014100 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
10 Sobic.004G231900 ribonuclease protein, putative, expressed K18758: DIS3-like exonuclease 2
11 Sobic.003G043200 EMB2410, putative, expressed -
12 Sobic.003G311900 CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed -
13 Sobic.003G150500 uncharacterized aarF domain-containing protein kinase 4, putative, expressed K08869: ADCK, aarF domain-containing kinase
14 Sobic.003G105900 expressed protein -
15 Sobic.008G167600 VTC2, putative, expressed -
16 Sobic.005G038500 pentatricopeptide containing protein, putative, expressed -
17 Sobic.010G226000 expressed protein -
18 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
19 Sobic.002G341000 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
20 Sobic.010G150100 expressed protein -


Gene co-expression network
sample Sobic003G107500 Sobic003G107500 Sobic004G001500 Sobic004G001500 Sobic003G107500--Sobic004G001500 Sobic002G043800 Sobic002G043800 Sobic003G107500--Sobic002G043800 Sobic002G383600 Sobic002G383600 Sobic003G107500--Sobic002G383600 Sobic001G310100 Sobic001G310100 Sobic003G107500--Sobic001G310100 Sobic004G146600 Sobic004G146600 Sobic003G107500--Sobic004G146600 Sobic003G298200 Sobic003G298200 Sobic003G107500--Sobic003G298200 Sobic003G373500 Sobic003G373500 Sobic003G107500--Sobic003G373500 Sobic005G187300 Sobic005G187300 Sobic003G107500--Sobic005G187300 Sobic010G014100 Sobic010G014100 Sobic003G107500--Sobic010G014100 Sobic002G146300 Sobic002G146300 Sobic004G001500--Sobic002G146300 Sobic003G043200 Sobic003G043200 Sobic004G001500--Sobic003G043200 Sobic004G001500--Sobic005G187300 Sobic001G370900 Sobic001G370900 Sobic004G001500--Sobic001G370900 Sobic001G457800 Sobic001G457800 Sobic004G001500--Sobic001G457800 Sobic009G256400 Sobic009G256400 Sobic004G001500--Sobic009G256400 Sobic003G166750 Sobic003G166750 Sobic004G001500--Sobic003G166750 Sobic004G356700 Sobic004G356700 Sobic004G001500--Sobic004G356700 Sobic001G527800 Sobic001G527800 Sobic004G001500--Sobic001G527800 Sobic010G150100 Sobic010G150100 Sobic002G043800--Sobic010G150100 Sobic002G043800--Sobic003G107500 Sobic002G043800--Sobic004G146600 Sobic008G167600 Sobic008G167600 Sobic002G043800--Sobic008G167600 Sobic004G151300 Sobic004G151300 Sobic002G043800--Sobic004G151300 Sobic003G150500 Sobic003G150500 Sobic002G043800--Sobic003G150500 Sobic004G312600 Sobic004G312600 Sobic002G043800--Sobic004G312600 Sobic003G271400 Sobic003G271400 Sobic002G043800--Sobic003G271400 Sobic002G295100 Sobic002G295100 Sobic002G043800--Sobic002G295100 Sobic006G257800 Sobic006G257800 Sobic002G383600--Sobic006G257800 Sobic010G227100 Sobic010G227100 Sobic002G383600--Sobic010G227100 Sobic006G051800 Sobic006G051800 Sobic002G383600--Sobic006G051800 Sobic009G074400 Sobic009G074400 Sobic002G383600--Sobic009G074400 Sobic002G383600--Sobic004G001500 Sobic002G383600--Sobic003G107500 Sobic004G189200 Sobic004G189200 Sobic002G383600--Sobic004G189200 Sobic006G275100 Sobic006G275100 Sobic002G383600--Sobic006G275100 Sobic007G190000 Sobic007G190000 Sobic002G383600--Sobic007G190000 Sobic001G310100--Sobic003G107500 Sobic001G310100--Sobic010G014100 Sobic010G226000 Sobic010G226000 Sobic001G310100--Sobic010G226000 Sobic002G196200 Sobic002G196200 Sobic001G310100--Sobic002G196200 Sobic007G099200 Sobic007G099200 Sobic001G310100--Sobic007G099200 Sobic001G310100--Sobic003G298200 Sobic001G310100--Sobic002G043800 Sobic003G119700 Sobic003G119700 Sobic001G310100--Sobic003G119700 Sobic001G310100--Sobic003G150500 Sobic001G230000 Sobic001G230000 Sobic004G146600--Sobic001G230000 Sobic001G298900 Sobic001G298900 Sobic004G146600--Sobic001G298900 Sobic004G146600--Sobic004G001500 Sobic006G219600 Sobic006G219600 Sobic004G146600--Sobic006G219600 Sobic004G146600--Sobic002G043800 Sobic004G143475 Sobic004G143475 Sobic004G146600--Sobic004G143475 Sobic010G132600 Sobic010G132600 Sobic004G146600--Sobic010G132600 Sobic003G155100 Sobic003G155100 Sobic004G146600--Sobic003G155100 Sobic004G146600--Sobic003G043200 Sobic003G298200--Sobic010G150100 Sobic004G086300 Sobic004G086300 Sobic003G298200--Sobic004G086300 Sobic003G298200--Sobic003G150500 Sobic003G298200--Sobic003G107500 Sobic003G105900 Sobic003G105900 Sobic003G298200--Sobic003G105900 Sobic005G201000 Sobic005G201000 Sobic003G298200--Sobic005G201000 Sobic009G040400 Sobic009G040400 Sobic003G298200--Sobic009G040400 Sobic003G298200--Sobic002G043800 Sobic009G103000 Sobic009G103000 Sobic003G298200--Sobic009G103000 Sobic003G264100 Sobic003G264100 Sobic003G373500--Sobic003G264100 Sobic003G373500--Sobic003G107500 Sobic002G335000 Sobic002G335000 Sobic003G373500--Sobic002G335000 Sobic001G333100 Sobic001G333100 Sobic003G373500--Sobic001G333100 Sobic004G252900 Sobic004G252900 Sobic003G373500--Sobic004G252900 Sobic003G311900 Sobic003G311900 Sobic003G373500--Sobic003G311900 Sobic010G239900 Sobic010G239900 Sobic003G373500--Sobic010G239900 Sobic002G311100 Sobic002G311100 Sobic003G373500--Sobic002G311100 Sobic003G373500--Sobic010G226000 Sobic005G187300--Sobic004G001500 Sobic003G196300 Sobic003G196300 Sobic005G187300--Sobic003G196300 Sobic005G187300--Sobic002G146300 Sobic004G291900 Sobic004G291900 Sobic005G187300--Sobic004G291900 Sobic001G192000 Sobic001G192000 Sobic005G187300--Sobic001G192000 Sobic005G187300--Sobic006G219600 Sobic001G542500 Sobic001G542500 Sobic005G187300--Sobic001G542500 Sobic008G085300 Sobic008G085300 Sobic005G187300--Sobic008G085300 Sobic005G187300--Sobic009G256400 Sobic010G014100--Sobic003G107500 Sobic002G211800 Sobic002G211800 Sobic010G014100--Sobic002G211800 Sobic001G128300 Sobic001G128300 Sobic010G014100--Sobic001G128300 Sobic010G014100--Sobic010G226000 Sobic010G014100--Sobic001G310100 Sobic002G344000 Sobic002G344000 Sobic010G014100--Sobic002G344000 Sobic001G100900 Sobic001G100900 Sobic010G014100--Sobic001G100900 Sobic001G389100 Sobic001G389100 Sobic010G014100--Sobic001G389100 Sobic002G213300 Sobic002G213300 Sobic010G014100--Sobic002G213300
Octagon: transcription factors


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