Gene annotation
Transcriptome id Sobic.002G043800.1
Synonym Sb02g003750
Functional annotation regulator of chromosome condensation/beta-lactamase-inhibitor protein II, putative, expressed
UniProt C5XAA4
Pfam PF00415 PF12796
Panther DB PTHR22870:SF175 PTHR22870
NCBI CDD KOG1427; Uncharacterized conserved protein, contains RCC1 domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G03790 : ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein
RAP-DB (Rice) LOC_Os07g07080.1 : regulator of chromosome condensation/beta-lactamase-inhibitor protein II, putative, expressed
MaizeGDB (Corn) Zm00025a027740 , Zm00025a033437 , Zm00025a045088 , Zm00025a027739
Brachypodium KQK20745 , KQK20746
Barley HORVU2Hr1G057860.2 , HORVU2Hr1G057860.3 , HORVU2Hr1G057860.1 , HORVU2Hr1G057860.6 , HORVU2Hr1G057860.7 , HORVU2Hr1G057860.4 , HORVU2Hr1G057860.5 , HORVU2Hr1G057860.8 , HORVU2Hr1G057860.9 , HORVU2Hr1G057860.10 , HORVU2Hr1G057860.11 , HORVU2Hr1G057860.12 , HORVU2Hr1G057860.13
Wheat TraesCS2B02G270400 , TraesCS2B02G270400 , TraesCS2D02G248500 , TraesCS2D02G248500 , TraesCS2A02G246100
Populus -


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cDNA sequences
Sobic.002G043800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G150100 expressed protein -
2 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
3 Sobic.004G146600 lipase, putative, expressed -
4 Sobic.008G167600 VTC2, putative, expressed -
5 Sobic.004G151300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF803 domain containing, putative, expressed -
6 Sobic.003G150500 uncharacterized aarF domain-containing protein kinase 4, putative, expressed K08869: ADCK, aarF domain-containing kinase
7 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
8 Sobic.003G271400 chloride transporter, chloride channel family, putative, expressed -
9 Sobic.002G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADPH reductase, putative, expressed K00327: NADPH-ferrihemoprotein reductase
10 Sobic.003G105900 expressed protein -
11 Sobic.004G231900 ribonuclease protein, putative, expressed K18758: DIS3-like exonuclease 2
12 Sobic.002G291800 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
13 Sobic.003G298200 dehydrogenase, putative, expressed -
14 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
15 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
16 Sobic.007G227100 expressed protein -
17 Sobic.004G127800 AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
18 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
19 Sobic.002G341000 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
20 Sobic.005G038500 pentatricopeptide containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G043800 Sobic002G043800 Sobic010G150100 Sobic010G150100 Sobic002G043800--Sobic010G150100 Sobic003G107500 Sobic003G107500 Sobic002G043800--Sobic003G107500 Sobic004G146600 Sobic004G146600 Sobic002G043800--Sobic004G146600 Sobic008G167600 Sobic008G167600 Sobic002G043800--Sobic008G167600 Sobic004G151300 Sobic004G151300 Sobic002G043800--Sobic004G151300 Sobic003G150500 Sobic003G150500 Sobic002G043800--Sobic003G150500 Sobic004G312600 Sobic004G312600 Sobic002G043800--Sobic004G312600 Sobic003G271400 Sobic003G271400 Sobic002G043800--Sobic003G271400 Sobic002G295100 Sobic002G295100 Sobic002G043800--Sobic002G295100 Sobic010G150100--Sobic004G151300 Sobic010G150100--Sobic004G312600 Sobic001G331600 Sobic001G331600 Sobic010G150100--Sobic001G331600 Sobic001G345100 Sobic001G345100 Sobic010G150100--Sobic001G345100 Sobic004G143300 Sobic004G143300 Sobic010G150100--Sobic004G143300 Sobic004G127800 Sobic004G127800 Sobic010G150100--Sobic004G127800 Sobic010G150100--Sobic002G043800 Sobic007G227100 Sobic007G227100 Sobic010G150100--Sobic007G227100 Sobic003G003450 Sobic003G003450 Sobic010G150100--Sobic003G003450 Sobic004G001500 Sobic004G001500 Sobic003G107500--Sobic004G001500 Sobic003G107500--Sobic002G043800 Sobic002G383600 Sobic002G383600 Sobic003G107500--Sobic002G383600 Sobic001G310100 Sobic001G310100 Sobic003G107500--Sobic001G310100 Sobic003G107500--Sobic004G146600 Sobic003G298200 Sobic003G298200 Sobic003G107500--Sobic003G298200 Sobic003G373500 Sobic003G373500 Sobic003G107500--Sobic003G373500 Sobic005G187300 Sobic005G187300 Sobic003G107500--Sobic005G187300 Sobic010G014100 Sobic010G014100 Sobic003G107500--Sobic010G014100 Sobic001G230000 Sobic001G230000 Sobic004G146600--Sobic001G230000 Sobic001G298900 Sobic001G298900 Sobic004G146600--Sobic001G298900 Sobic004G146600--Sobic004G001500 Sobic006G219600 Sobic006G219600 Sobic004G146600--Sobic006G219600 Sobic004G146600--Sobic002G043800 Sobic004G143475 Sobic004G143475 Sobic004G146600--Sobic004G143475 Sobic010G132600 Sobic010G132600 Sobic004G146600--Sobic010G132600 Sobic003G155100 Sobic003G155100 Sobic004G146600--Sobic003G155100 Sobic003G043200 Sobic003G043200 Sobic004G146600--Sobic003G043200 Sobic006G257800 Sobic006G257800 Sobic008G167600--Sobic006G257800 Sobic008G167600--Sobic004G151300 Sobic002G291800 Sobic002G291800 Sobic008G167600--Sobic002G291800 Sobic008G167600--Sobic004G312600 Sobic008G167600--Sobic004G127800 Sobic002G293500 Sobic002G293500 Sobic008G167600--Sobic002G293500 Sobic002G081400 Sobic002G081400 Sobic008G167600--Sobic002G081400 Sobic006G090100 Sobic006G090100 Sobic008G167600--Sobic006G090100 Sobic001G333800 Sobic001G333800 Sobic008G167600--Sobic001G333800 Sobic004G151300--Sobic010G150100 Sobic004G151300--Sobic008G167600 Sobic004G151300--Sobic001G345100 Sobic004G151300--Sobic006G090100 Sobic004G151300--Sobic004G312600 Sobic001G207800 Sobic001G207800 Sobic004G151300--Sobic001G207800 Sobic004G151300--Sobic001G331600 Sobic002G382700 Sobic002G382700 Sobic004G151300--Sobic002G382700 Sobic004G151300--Sobic007G227100 Sobic003G150500--Sobic002G043800 Sobic003G150500--Sobic003G298200 Sobic003G150500--Sobic003G107500 Sobic003G150500--Sobic010G150100 Sobic001G282800 Sobic001G282800 Sobic003G150500--Sobic001G282800 Sobic001G411200 Sobic001G411200 Sobic003G150500--Sobic001G411200 Sobic005G176100 Sobic005G176100 Sobic003G150500--Sobic005G176100 Sobic003G150500--Sobic004G151300 Sobic004G086300 Sobic004G086300 Sobic003G150500--Sobic004G086300 Sobic004G312600--Sobic007G227100 Sobic004G312600--Sobic004G127800 Sobic008G038500 Sobic008G038500 Sobic004G312600--Sobic008G038500 Sobic004G312600--Sobic001G331600 Sobic004G312600--Sobic002G382700 Sobic004G312600--Sobic002G293500 Sobic001G077300 Sobic001G077300 Sobic004G312600--Sobic001G077300 Sobic005G106600 Sobic005G106600 Sobic004G312600--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic004G312600--Sobic003G220100 Sobic003G271400--Sobic007G227100 Sobic003G271400--Sobic004G312600 Sobic004G069000 Sobic004G069000 Sobic003G271400--Sobic004G069000 Sobic003G271400--Sobic003G003450 Sobic004G337400 Sobic004G337400 Sobic003G271400--Sobic004G337400 Sobic003G271400--Sobic004G127800 Sobic003G271400--Sobic008G038500 Sobic003G271400--Sobic004G151300 Sobic003G271400--Sobic010G150100 Sobic004G323400 Sobic004G323400 Sobic002G295100--Sobic004G323400 Sobic002G295100--Sobic001G331600 Sobic001G485100 Sobic001G485100 Sobic002G295100--Sobic001G485100 Sobic002G295100--Sobic002G293500 Sobic002G295100--Sobic004G312600 Sobic001G046000 Sobic001G046000 Sobic002G295100--Sobic001G046000 Sobic009G225600 Sobic009G225600 Sobic002G295100--Sobic009G225600 Sobic002G295100--Sobic006G257800 Sobic003G162400 Sobic003G162400 Sobic002G295100--Sobic003G162400
Octagon: transcription factors


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