Gene annotation
Transcriptome id Sobic.005G038500.1
Synonym Sb05g003220
Functional annotation pentatricopeptide containing protein, putative, expressed
UniProt C5Y4P7
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF724
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G22960 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os12g05640.1 : pentatricopeptide containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a029044 , Zm00025a033491 , Zm00025a053892
Brachypodium PNT65433 , KQJ92221 , KQJ92223 , KQJ92222 , PNT65429 , PNT65428 , PNT65427 , PNT65432 , PNT65430 , PNT65431
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G146600 lipase, putative, expressed -
2 Sobic.010G132600 selenoprotein O, putative, expressed -
3 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
4 Sobic.003G105900 expressed protein -
5 Sobic.005G187300 lipin, N-terminal conserved region family protein, expressed K15728: phosphatidate phosphatase LPIN
6 Sobic.010G014100 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
7 Sobic.003G310300 pentatricopeptide repeat domain containing protein, putative, expressed -
8 Sobic.001G094600 pentatricopeptide, putative, expressed -
9 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
10 Sobic.002G408200 sec8 exocyst complex component specific domain containing protein, expressed K06111: EXOC4, exocyst complex component 4
11 Sobic.002G043800 regulator of chromosome condensation/beta-lactamase-inhibitor protein II, putative, expressed -
12 Sobic.003G029500 zinc finger, C3HC4 type family protein, expressed -
13 Sobic.003G298200 dehydrogenase, putative, expressed -
14 Sobic.002G042800 expressed protein -
15 Sobic.005G201000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
16 Sobic.002G213300 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
17 Sobic.001G492300 OsPP2Ac-5 - Phosphatase 2A isoform 5 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
18 Sobic.005G132000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed -
19 Sobic.004G154700 choline/ethanolamine kinase, putative, expressed -
20 Sobic.003G057233 - -


Gene co-expression network
sample Sobic005G038500 Sobic005G038500 Sobic004G146600 Sobic004G146600 Sobic005G038500--Sobic004G146600 Sobic010G132600 Sobic010G132600 Sobic005G038500--Sobic010G132600 Sobic003G107500 Sobic003G107500 Sobic005G038500--Sobic003G107500 Sobic003G105900 Sobic003G105900 Sobic005G038500--Sobic003G105900 Sobic005G187300 Sobic005G187300 Sobic005G038500--Sobic005G187300 Sobic010G014100 Sobic010G014100 Sobic005G038500--Sobic010G014100 Sobic003G310300 Sobic003G310300 Sobic005G038500--Sobic003G310300 Sobic001G094600 Sobic001G094600 Sobic005G038500--Sobic001G094600 Sobic004G001500 Sobic004G001500 Sobic005G038500--Sobic004G001500 Sobic001G230000 Sobic001G230000 Sobic004G146600--Sobic001G230000 Sobic001G298900 Sobic001G298900 Sobic004G146600--Sobic001G298900 Sobic004G146600--Sobic004G001500 Sobic006G219600 Sobic006G219600 Sobic004G146600--Sobic006G219600 Sobic002G043800 Sobic002G043800 Sobic004G146600--Sobic002G043800 Sobic004G143475 Sobic004G143475 Sobic004G146600--Sobic004G143475 Sobic004G146600--Sobic010G132600 Sobic003G155100 Sobic003G155100 Sobic004G146600--Sobic003G155100 Sobic003G043200 Sobic003G043200 Sobic004G146600--Sobic003G043200 Sobic002G257750 Sobic002G257750 Sobic010G132600--Sobic002G257750 Sobic010G132600--Sobic004G146600 Sobic005G106600 Sobic005G106600 Sobic010G132600--Sobic005G106600 Sobic005G132000 Sobic005G132000 Sobic010G132600--Sobic005G132000 Sobic004G356700 Sobic004G356700 Sobic010G132600--Sobic004G356700 Sobic003G057233 Sobic003G057233 Sobic010G132600--Sobic003G057233 Sobic003G398700 Sobic003G398700 Sobic010G132600--Sobic003G398700 Sobic003G029500 Sobic003G029500 Sobic010G132600--Sobic003G029500 Sobic004G231900 Sobic004G231900 Sobic010G132600--Sobic004G231900 Sobic003G107500--Sobic004G001500 Sobic003G107500--Sobic002G043800 Sobic002G383600 Sobic002G383600 Sobic003G107500--Sobic002G383600 Sobic001G310100 Sobic001G310100 Sobic003G107500--Sobic001G310100 Sobic003G107500--Sobic004G146600 Sobic003G298200 Sobic003G298200 Sobic003G107500--Sobic003G298200 Sobic003G373500 Sobic003G373500 Sobic003G107500--Sobic003G373500 Sobic003G107500--Sobic005G187300 Sobic003G107500--Sobic010G014100 Sobic009G040400 Sobic009G040400 Sobic003G105900--Sobic009G040400 Sobic003G105900--Sobic003G298200 Sobic003G264800 Sobic003G264800 Sobic003G105900--Sobic003G264800 Sobic009G162600 Sobic009G162600 Sobic003G105900--Sobic009G162600 Sobic003G105900--Sobic003G107500 Sobic003G105900--Sobic005G038500 Sobic003G105900--Sobic003G029500 Sobic009G103000 Sobic009G103000 Sobic003G105900--Sobic009G103000 Sobic007G079400 Sobic007G079400 Sobic003G105900--Sobic007G079400 Sobic005G187300--Sobic004G001500 Sobic003G196300 Sobic003G196300 Sobic005G187300--Sobic003G196300 Sobic002G146300 Sobic002G146300 Sobic005G187300--Sobic002G146300 Sobic004G291900 Sobic004G291900 Sobic005G187300--Sobic004G291900 Sobic001G192000 Sobic001G192000 Sobic005G187300--Sobic001G192000 Sobic005G187300--Sobic006G219600 Sobic001G542500 Sobic001G542500 Sobic005G187300--Sobic001G542500 Sobic008G085300 Sobic008G085300 Sobic005G187300--Sobic008G085300 Sobic009G256400 Sobic009G256400 Sobic005G187300--Sobic009G256400 Sobic010G014100--Sobic003G107500 Sobic002G211800 Sobic002G211800 Sobic010G014100--Sobic002G211800 Sobic001G128300 Sobic001G128300 Sobic010G014100--Sobic001G128300 Sobic010G226000 Sobic010G226000 Sobic010G014100--Sobic010G226000 Sobic010G014100--Sobic001G310100 Sobic002G344000 Sobic002G344000 Sobic010G014100--Sobic002G344000 Sobic001G100900 Sobic001G100900 Sobic010G014100--Sobic001G100900 Sobic001G389100 Sobic001G389100 Sobic010G014100--Sobic001G389100 Sobic002G213300 Sobic002G213300 Sobic010G014100--Sobic002G213300 Sobic002G252400 Sobic002G252400 Sobic003G310300--Sobic002G252400 Sobic003G043000 Sobic003G043000 Sobic003G310300--Sobic003G043000 Sobic003G296900 Sobic003G296900 Sobic003G310300--Sobic003G296900 Sobic008G037700 Sobic008G037700 Sobic003G310300--Sobic008G037700 Sobic003G241700 Sobic003G241700 Sobic003G310300--Sobic003G241700 Sobic003G310300--Sobic003G107500 Sobic004G265500 Sobic004G265500 Sobic003G310300--Sobic004G265500 Sobic003G308500 Sobic003G308500 Sobic003G310300--Sobic003G308500 Sobic003G310300--Sobic005G038500 Sobic002G103600 Sobic002G103600 Sobic001G094600--Sobic002G103600 Sobic002G042800 Sobic002G042800 Sobic001G094600--Sobic002G042800 Sobic010G279450 Sobic010G279450 Sobic001G094600--Sobic010G279450 Sobic008G028700 Sobic008G028700 Sobic001G094600--Sobic008G028700 Sobic003G444800 Sobic003G444800 Sobic001G094600--Sobic003G444800 Sobic001G311500 Sobic001G311500 Sobic001G094600--Sobic001G311500 Sobic003G095900 Sobic003G095900 Sobic001G094600--Sobic003G095900 Sobic009G247400 Sobic009G247400 Sobic001G094600--Sobic009G247400 Sobic003G052200 Sobic003G052200 Sobic001G094600--Sobic003G052200 Sobic004G001500--Sobic002G146300 Sobic004G001500--Sobic003G043200 Sobic004G001500--Sobic005G187300 Sobic001G370900 Sobic001G370900 Sobic004G001500--Sobic001G370900 Sobic001G457800 Sobic001G457800 Sobic004G001500--Sobic001G457800 Sobic004G001500--Sobic009G256400 Sobic003G166750 Sobic003G166750 Sobic004G001500--Sobic003G166750 Sobic004G001500--Sobic004G356700 Sobic001G527800 Sobic001G527800 Sobic004G001500--Sobic001G527800
Octagon: transcription factors


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