Gene annotation
Transcriptome id Sobic.002G042800.1
Synonym Sb02g003665
Functional annotation expressed protein
UniProt C5XA98
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os04g52650.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G028700 SET domain containing protein, expressed -
2 Sobic.001G456900 expressed protein -
3 Sobic.006G216100 expressed protein -
4 Sobic.002G408200 sec8 exocyst complex component specific domain containing protein, expressed K06111: EXOC4, exocyst complex component 4
5 Sobic.001G094600 pentatricopeptide, putative, expressed -
6 Sobic.010G243900 OsFBO9 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
7 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
8 Sobic.008G113100 protein binding protein, putative, expressed -
9 Sobic.002G103600 glycosyl transferase, group 1 domain containing protein, expressed K03857: PIGA, phosphatidylinositol N-acetylglucosaminyltransferase subunit A
10 Sobic.003G052200 G-patch domain containing protein, expressed -
11 Sobic.007G074600 tetratricopeptide repeat domain containing protein, expressed K15201: GTP3C3, general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
12 Sobic.003G398700 expressed protein K15210: snRNA-activating protein complex subunit 3
13 Sobic.008G162900 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
14 Sobic.006G032500 - -
15 Sobic.004G023000 SAC9, putative, expressed -
16 Sobic.004G258700 PHD-finger family protein, expressed -
17 Sobic.006G252900 ubiquitin family protein, putative, expressed -
18 Sobic.001G046200 - -
19 Sobic.001G455600 cysteine synthase, putative, expressed K01738: cysteine synthase
20 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein


Gene co-expression network
sample Sobic002G042800 Sobic002G042800 Sobic008G028700 Sobic008G028700 Sobic002G042800--Sobic008G028700 Sobic001G456900 Sobic001G456900 Sobic002G042800--Sobic001G456900 Sobic006G216100 Sobic006G216100 Sobic002G042800--Sobic006G216100 Sobic002G408200 Sobic002G408200 Sobic002G042800--Sobic002G408200 Sobic001G094600 Sobic001G094600 Sobic002G042800--Sobic001G094600 Sobic010G243900 Sobic010G243900 Sobic002G042800--Sobic010G243900 Sobic010G279450 Sobic010G279450 Sobic002G042800--Sobic010G279450 Sobic008G113100 Sobic008G113100 Sobic002G042800--Sobic008G113100 Sobic002G103600 Sobic002G103600 Sobic002G042800--Sobic002G103600 Sobic008G028700--Sobic010G279450 Sobic009G040600 Sobic009G040600 Sobic008G028700--Sobic009G040600 Sobic004G009600 Sobic004G009600 Sobic008G028700--Sobic004G009600 Sobic004G258700 Sobic004G258700 Sobic008G028700--Sobic004G258700 Sobic007G065400 Sobic007G065400 Sobic008G028700--Sobic007G065400 Sobic010G139000 Sobic010G139000 Sobic008G028700--Sobic010G139000 Sobic002G006900 Sobic002G006900 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G028700--Sobic008G113100 Sobic001G036050 Sobic001G036050 Sobic001G456900--Sobic001G036050 Sobic001G456900--Sobic010G139000 Sobic001G456900--Sobic004G258700 Sobic001G456900--Sobic008G113100 Sobic001G456900--Sobic008G028700 Sobic002G180666 Sobic002G180666 Sobic001G456900--Sobic002G180666 Sobic001G311500 Sobic001G311500 Sobic001G456900--Sobic001G311500 Sobic003G398700 Sobic003G398700 Sobic001G456900--Sobic003G398700 Sobic003G101500 Sobic003G101500 Sobic001G456900--Sobic003G101500 Sobic004G034800 Sobic004G034800 Sobic006G216100--Sobic004G034800 Sobic006G216100--Sobic002G042800 Sobic003G168100 Sobic003G168100 Sobic006G216100--Sobic003G168100 Sobic001G455600 Sobic001G455600 Sobic006G216100--Sobic001G455600 Sobic006G252900 Sobic006G252900 Sobic006G216100--Sobic006G252900 Sobic009G132700 Sobic009G132700 Sobic006G216100--Sobic009G132700 Sobic007G031900 Sobic007G031900 Sobic006G216100--Sobic007G031900 Sobic006G216100--Sobic003G398700 Sobic004G244900 Sobic004G244900 Sobic006G216100--Sobic004G244900 Sobic002G408200--Sobic008G028700 Sobic005G013200 Sobic005G013200 Sobic002G408200--Sobic005G013200 Sobic002G408200--Sobic002G103600 Sobic007G008900 Sobic007G008900 Sobic002G408200--Sobic007G008900 Sobic003G052200 Sobic003G052200 Sobic002G408200--Sobic003G052200 Sobic001G161800 Sobic001G161800 Sobic002G408200--Sobic001G161800 Sobic002G408200--Sobic010G279450 Sobic003G059750 Sobic003G059750 Sobic002G408200--Sobic003G059750 Sobic001G451400 Sobic001G451400 Sobic002G408200--Sobic001G451400 Sobic001G094600--Sobic002G103600 Sobic001G094600--Sobic002G042800 Sobic001G094600--Sobic010G279450 Sobic001G094600--Sobic008G028700 Sobic003G444800 Sobic003G444800 Sobic001G094600--Sobic003G444800 Sobic001G094600--Sobic001G311500 Sobic003G095900 Sobic003G095900 Sobic001G094600--Sobic003G095900 Sobic009G247400 Sobic009G247400 Sobic001G094600--Sobic009G247400 Sobic001G094600--Sobic003G052200 Sobic001G046200 Sobic001G046200 Sobic010G243900--Sobic001G046200 Sobic004G042200 Sobic004G042200 Sobic010G243900--Sobic004G042200 Sobic010G149200 Sobic010G149200 Sobic010G243900--Sobic010G149200 Sobic010G243900--Sobic001G161800 Sobic010G243900--Sobic003G398700 Sobic010G243900--Sobic008G113100 Sobic010G021500 Sobic010G021500 Sobic010G243900--Sobic010G021500 Sobic002G029900 Sobic002G029900 Sobic010G243900--Sobic002G029900 Sobic010G243900--Sobic002G042800 Sobic005G112300 Sobic005G112300 Sobic010G279450--Sobic005G112300 Sobic010G279450--Sobic010G139000 Sobic002G405800 Sobic002G405800 Sobic010G279450--Sobic002G405800 Sobic004G314000 Sobic004G314000 Sobic010G279450--Sobic004G314000 Sobic010G279450--Sobic003G059750 Sobic010G279450--Sobic008G028700 Sobic001G363500 Sobic001G363500 Sobic010G279450--Sobic001G363500 Sobic010G279450--Sobic004G009600 Sobic010G247800 Sobic010G247800 Sobic010G279450--Sobic010G247800 Sobic008G113100--Sobic004G258700 Sobic008G113100--Sobic008G028700 Sobic005G064000 Sobic005G064000 Sobic008G113100--Sobic005G064000 Sobic008G113100--Sobic007G065400 Sobic008G113100--Sobic001G456900 Sobic009G024000 Sobic009G024000 Sobic008G113100--Sobic009G024000 Sobic008G113100--Sobic009G040600 Sobic004G208900 Sobic004G208900 Sobic008G113100--Sobic004G208900 Sobic004G039200 Sobic004G039200 Sobic008G113100--Sobic004G039200 Sobic002G103600--Sobic003G444800 Sobic002G103600--Sobic005G013200 SobicK028600 SobicK028600 Sobic002G103600--SobicK028600 Sobic002G103600--Sobic003G059750 Sobic002G103600--Sobic001G311500 Sobic002G103600--Sobic009G247400 Sobic002G103600--Sobic002G408200 Sobic002G103600--Sobic008G028700 Sobic007G042400 Sobic007G042400 Sobic002G103600--Sobic007G042400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.