Gene annotation
Transcriptome id Sobic.002G408200.1,Sobic.002G408200.2
Synonym ATSEC8, Sb02g042200, SEC8
Functional annotation sec8 exocyst complex component specific domain containing protein, expressed
UniProt C5X4U9 , C5X4S3
Pfam PF04048
Panther DB PTHR14146
NCBI CDD KOG3691; Exocyst complex subunit Sec8
KEGG Orthology K06111; EXOC4, exocyst complex component 4
Gene Ontology GO:0015031; protein transport GO:0006904vesicle docking involved in exocytosis GO:0000145exocyst


Orthologs (automatic annotation)
TAIR AT3G10380 : subunit of exocyst complex 8
RAP-DB (Rice) LOC_Os08g22864.1,LOC_Os08g22864.2 : sec8 exocyst complex component specific domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049068
Brachypodium KQJ96022
Barley HORVU7Hr1G061620.1 , HORVU7Hr1G061620.2 , HORVU7Hr1G061620.3 , HORVU7Hr1G061640.2 , HORVU7Hr1G061640.1 , HORVU7Hr1G061610.1 , HORVU7Hr1G061610.2
Wheat TraesCS7D02G282100 , TraesCS7D02G282100 , TraesCS7D02G282100 , TraesCS7D02G282100 , TraesCS7D02G282100 , TraesCS7D02G282100 , TraesCS7D02G282100 , TraesCS7B02G181500 , TraesCS7A02G284500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G028700 SET domain containing protein, expressed -
2 Sobic.005G013200 BAH domain containing protein, expressed -
3 Sobic.002G103600 glycosyl transferase, group 1 domain containing protein, expressed K03857: PIGA, phosphatidylinositol N-acetylglucosaminyltransferase subunit A
4 Sobic.007G008900 SAC domain containing protein, putative, expressed -
5 Sobic.003G052200 G-patch domain containing protein, expressed -
6 Sobic.001G161800 F-box/LRR domain containing protein, putative, expressed -
7 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
8 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
9 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
10 Sobic.008G113100 protein binding protein, putative, expressed -
11 Sobic.008G162900 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
12 Sobic.003G444800 expressed protein -
13 Sobic.004G258700 PHD-finger family protein, expressed -
14 Sobic.002G042800 expressed protein -
15 Sobic.007G011300 SGR2, putative, expressed -
16 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
17 Sobic.002G188600 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
18 Sobic.001G046200 - -
19 Sobic.001G384300 myb-like DNA-binding domain containing protein, expressed -
20 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4


Gene co-expression network
sample Sobic002G408200 Sobic002G408200 Sobic008G028700 Sobic008G028700 Sobic002G408200--Sobic008G028700 Sobic005G013200 Sobic005G013200 Sobic002G408200--Sobic005G013200 Sobic002G103600 Sobic002G103600 Sobic002G408200--Sobic002G103600 Sobic007G008900 Sobic007G008900 Sobic002G408200--Sobic007G008900 Sobic003G052200 Sobic003G052200 Sobic002G408200--Sobic003G052200 Sobic001G161800 Sobic001G161800 Sobic002G408200--Sobic001G161800 Sobic010G279450 Sobic010G279450 Sobic002G408200--Sobic010G279450 Sobic003G059750 Sobic003G059750 Sobic002G408200--Sobic003G059750 Sobic001G451400 Sobic001G451400 Sobic002G408200--Sobic001G451400 Sobic008G028700--Sobic010G279450 Sobic009G040600 Sobic009G040600 Sobic008G028700--Sobic009G040600 Sobic004G009600 Sobic004G009600 Sobic008G028700--Sobic004G009600 Sobic004G258700 Sobic004G258700 Sobic008G028700--Sobic004G258700 Sobic007G065400 Sobic007G065400 Sobic008G028700--Sobic007G065400 Sobic010G139000 Sobic010G139000 Sobic008G028700--Sobic010G139000 Sobic002G006900 Sobic002G006900 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G113100 Sobic008G113100 Sobic008G028700--Sobic008G113100 Sobic005G013200--Sobic002G103600 Sobic010G129200 Sobic010G129200 Sobic005G013200--Sobic010G129200 Sobic008G162900 Sobic008G162900 Sobic005G013200--Sobic008G162900 Sobic001G407200 Sobic001G407200 Sobic005G013200--Sobic001G407200 Sobic001G222500 Sobic001G222500 Sobic005G013200--Sobic001G222500 Sobic005G013200--Sobic002G408200 Sobic005G013200--Sobic008G028700 Sobic001G251700 Sobic001G251700 Sobic005G013200--Sobic001G251700 Sobic004G084300 Sobic004G084300 Sobic005G013200--Sobic004G084300 Sobic003G444800 Sobic003G444800 Sobic002G103600--Sobic003G444800 Sobic002G103600--Sobic005G013200 SobicK028600 SobicK028600 Sobic002G103600--SobicK028600 Sobic002G103600--Sobic003G059750 Sobic001G311500 Sobic001G311500 Sobic002G103600--Sobic001G311500 Sobic009G247400 Sobic009G247400 Sobic002G103600--Sobic009G247400 Sobic002G103600--Sobic002G408200 Sobic002G103600--Sobic008G028700 Sobic007G042400 Sobic007G042400 Sobic002G103600--Sobic007G042400 Sobic007G008900--Sobic001G451400 Sobic002G112700 Sobic002G112700 Sobic007G008900--Sobic002G112700 Sobic001G114000 Sobic001G114000 Sobic007G008900--Sobic001G114000 Sobic007G011300 Sobic007G011300 Sobic007G008900--Sobic007G011300 Sobic007G008900--Sobic003G059750 Sobic004G067700 Sobic004G067700 Sobic007G008900--Sobic004G067700 Sobic007G008900--Sobic002G408200 Sobic007G217000 Sobic007G217000 Sobic007G008900--Sobic007G217000 Sobic001G155000 Sobic001G155000 Sobic007G008900--Sobic001G155000 Sobic009G126400 Sobic009G126400 Sobic003G052200--Sobic009G126400 Sobic004G208900 Sobic004G208900 Sobic003G052200--Sobic004G208900 Sobic003G052200--Sobic001G222500 Sobic003G052200--Sobic009G040600 Sobic003G052200--Sobic008G162900 Sobic003G052200--Sobic008G028700 Sobic003G052200--Sobic004G009600 Sobic003G052200--Sobic010G279450 Sobic009G024000 Sobic009G024000 Sobic003G052200--Sobic009G024000 Sobic001G161800--Sobic002G408200 Sobic001G161800--Sobic010G279450 Sobic010G243900 Sobic010G243900 Sobic001G161800--Sobic010G243900 Sobic001G161800--Sobic003G052200 Sobic001G161800--Sobic008G028700 Sobic001G161800--Sobic009G024000 Sobic002G405800 Sobic002G405800 Sobic001G161800--Sobic002G405800 Sobic001G161800--Sobic004G258700 Sobic001G161800--Sobic008G113100 Sobic005G112300 Sobic005G112300 Sobic010G279450--Sobic005G112300 Sobic010G279450--Sobic010G139000 Sobic010G279450--Sobic002G405800 Sobic004G314000 Sobic004G314000 Sobic010G279450--Sobic004G314000 Sobic010G279450--Sobic003G059750 Sobic010G279450--Sobic008G028700 Sobic001G363500 Sobic001G363500 Sobic010G279450--Sobic001G363500 Sobic010G279450--Sobic004G009600 Sobic010G247800 Sobic010G247800 Sobic010G279450--Sobic010G247800 Sobic007G103600 Sobic007G103600 Sobic003G059750--Sobic007G103600 Sobic005G207500 Sobic005G207500 Sobic003G059750--Sobic005G207500 Sobic003G059750--Sobic005G112300 Sobic003G059750--Sobic010G279450 Sobic002G404700 Sobic002G404700 Sobic003G059750--Sobic002G404700 Sobic003G059750--Sobic003G444800 Sobic003G059750--Sobic001G311500 Sobic003G059750--Sobic002G405800 Sobic002G071500 Sobic002G071500 Sobic003G059750--Sobic002G071500 Sobic001G451400--Sobic007G008900 Sobic009G165700 Sobic009G165700 Sobic001G451400--Sobic009G165700 Sobic001G441400 Sobic001G441400 Sobic001G451400--Sobic001G441400 Sobic001G389100 Sobic001G389100 Sobic001G451400--Sobic001G389100 Sobic001G451400--Sobic010G247800 Sobic003G404500 Sobic003G404500 Sobic001G451400--Sobic003G404500 Sobic010G226000 Sobic010G226000 Sobic001G451400--Sobic010G226000 Sobic005G027400 Sobic005G027400 Sobic001G451400--Sobic005G027400 Sobic003G422500 Sobic003G422500 Sobic001G451400--Sobic003G422500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.