Gene annotation
Transcriptome id Sobic.001G161800.1,Sobic.001G161800.4,Sobic.001G161800.3,Sobic.001G161800.2
Synonym FBL17, Sb01g014150
Functional annotation F-box/LRR domain containing protein, putative, expressed
UniProt A0A1B6QJ90 , A0A1B6QJ83 , C5WS55
Pfam PF00646
Panther DB PTHR24006
NCBI CDD KOG4341; F-box protein containing LRR KOG1947Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G54650 : RNI-like superfamily protein
RAP-DB (Rice) LOC_Os03g43390.3,LOC_Os03g43390.1,LOC_Os03g43390.4 : F-box/LRR domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a007352
Brachypodium PNT74405 , PNT74406 , KQK14085 , KQK14088 , KQK14089 , KQK14084 , KQK14086 , KQK14087 , KQK14092 , KQK14091 , KQK14090
Barley HORVU5Hr1G093570.1 , HORVU5Hr1G093590.11 , HORVU5Hr1G093590.10 , HORVU5Hr1G093590.12 , HORVU5Hr1G093590.9 , HORVU5Hr1G093590.5 , HORVU5Hr1G093590.4 , HORVU5Hr1G093590.7 , HORVU5Hr1G093590.1 , HORVU5Hr1G093590.2
Wheat TraesCS5D02G388400 , TraesCS5B02G382000 , TraesCS5A02G378400 , TraesCS5D02G388400 , TraesCS5D02G388400 , TraesCS5B02G382000 , TraesCS5B02G382000 , TraesCS5B02G382000 , TraesCS5B02G382000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G161800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G408200 sec8 exocyst complex component specific domain containing protein, expressed K06111: EXOC4, exocyst complex component 4
2 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
3 Sobic.010G243900 OsFBO9 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
4 Sobic.003G052200 G-patch domain containing protein, expressed -
5 Sobic.008G028700 SET domain containing protein, expressed -
6 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein
7 Sobic.002G405800 PHD-finger family protein, expressed -
8 Sobic.004G258700 PHD-finger family protein, expressed -
9 Sobic.008G113100 protein binding protein, putative, expressed -
10 Sobic.003G148000 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
11 Sobic.001G365900 PWWP domain containing protein, expressed -
12 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
13 Sobic.010G247800 zinc finger, C3HC4 type domain containing protein, expressed K10696: E3 ubiquitin-protein ligase BRE1
14 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
15 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
16 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
17 Sobic.001G046200 - -
18 Sobic.008G162900 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
19 Sobic.010G010700 PHD-finger family protein, expressed -
20 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11


Gene co-expression network
sample Sobic001G161800 Sobic001G161800 Sobic002G408200 Sobic002G408200 Sobic001G161800--Sobic002G408200 Sobic010G279450 Sobic010G279450 Sobic001G161800--Sobic010G279450 Sobic010G243900 Sobic010G243900 Sobic001G161800--Sobic010G243900 Sobic003G052200 Sobic003G052200 Sobic001G161800--Sobic003G052200 Sobic008G028700 Sobic008G028700 Sobic001G161800--Sobic008G028700 Sobic009G024000 Sobic009G024000 Sobic001G161800--Sobic009G024000 Sobic002G405800 Sobic002G405800 Sobic001G161800--Sobic002G405800 Sobic004G258700 Sobic004G258700 Sobic001G161800--Sobic004G258700 Sobic008G113100 Sobic008G113100 Sobic001G161800--Sobic008G113100 Sobic002G408200--Sobic008G028700 Sobic005G013200 Sobic005G013200 Sobic002G408200--Sobic005G013200 Sobic002G103600 Sobic002G103600 Sobic002G408200--Sobic002G103600 Sobic007G008900 Sobic007G008900 Sobic002G408200--Sobic007G008900 Sobic002G408200--Sobic003G052200 Sobic002G408200--Sobic001G161800 Sobic002G408200--Sobic010G279450 Sobic003G059750 Sobic003G059750 Sobic002G408200--Sobic003G059750 Sobic001G451400 Sobic001G451400 Sobic002G408200--Sobic001G451400 Sobic005G112300 Sobic005G112300 Sobic010G279450--Sobic005G112300 Sobic010G139000 Sobic010G139000 Sobic010G279450--Sobic010G139000 Sobic010G279450--Sobic002G405800 Sobic004G314000 Sobic004G314000 Sobic010G279450--Sobic004G314000 Sobic010G279450--Sobic003G059750 Sobic010G279450--Sobic008G028700 Sobic001G363500 Sobic001G363500 Sobic010G279450--Sobic001G363500 Sobic004G009600 Sobic004G009600 Sobic010G279450--Sobic004G009600 Sobic010G247800 Sobic010G247800 Sobic010G279450--Sobic010G247800 Sobic001G046200 Sobic001G046200 Sobic010G243900--Sobic001G046200 Sobic004G042200 Sobic004G042200 Sobic010G243900--Sobic004G042200 Sobic010G149200 Sobic010G149200 Sobic010G243900--Sobic010G149200 Sobic010G243900--Sobic001G161800 Sobic003G398700 Sobic003G398700 Sobic010G243900--Sobic003G398700 Sobic010G243900--Sobic008G113100 Sobic010G021500 Sobic010G021500 Sobic010G243900--Sobic010G021500 Sobic002G029900 Sobic002G029900 Sobic010G243900--Sobic002G029900 Sobic002G042800 Sobic002G042800 Sobic010G243900--Sobic002G042800 Sobic009G126400 Sobic009G126400 Sobic003G052200--Sobic009G126400 Sobic004G208900 Sobic004G208900 Sobic003G052200--Sobic004G208900 Sobic001G222500 Sobic001G222500 Sobic003G052200--Sobic001G222500 Sobic009G040600 Sobic009G040600 Sobic003G052200--Sobic009G040600 Sobic008G162900 Sobic008G162900 Sobic003G052200--Sobic008G162900 Sobic003G052200--Sobic008G028700 Sobic003G052200--Sobic004G009600 Sobic003G052200--Sobic010G279450 Sobic003G052200--Sobic009G024000 Sobic008G028700--Sobic010G279450 Sobic008G028700--Sobic009G040600 Sobic008G028700--Sobic004G009600 Sobic008G028700--Sobic004G258700 Sobic007G065400 Sobic007G065400 Sobic008G028700--Sobic007G065400 Sobic008G028700--Sobic010G139000 Sobic002G006900 Sobic002G006900 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G028700--Sobic008G113100 Sobic004G039200 Sobic004G039200 Sobic009G024000--Sobic004G039200 Sobic007G161000 Sobic007G161000 Sobic009G024000--Sobic007G161000 Sobic009G024000--Sobic008G028700 Sobic009G024000--Sobic008G113100 Sobic007G117400 Sobic007G117400 Sobic009G024000--Sobic007G117400 Sobic009G024000--Sobic009G040600 Sobic009G024000--Sobic004G009600 Sobic002G309600 Sobic002G309600 Sobic009G024000--Sobic002G309600 Sobic003G101500 Sobic003G101500 Sobic009G024000--Sobic003G101500 Sobic007G062800 Sobic007G062800 Sobic002G405800--Sobic007G062800 Sobic002G405800--Sobic005G112300 Sobic002G404700 Sobic002G404700 Sobic002G405800--Sobic002G404700 Sobic010G010700 Sobic010G010700 Sobic002G405800--Sobic010G010700 Sobic002G405800--Sobic010G279450 Sobic002G008900 Sobic002G008900 Sobic002G405800--Sobic002G008900 Sobic004G034900 Sobic004G034900 Sobic002G405800--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic002G405800--Sobic001G289600 Sobic002G405800--Sobic010G247800 Sobic004G258700--Sobic008G113100 Sobic004G258700--Sobic008G028700 Sobic001G456900 Sobic001G456900 Sobic004G258700--Sobic001G456900 Sobic003G148000 Sobic003G148000 Sobic004G258700--Sobic003G148000 Sobic004G258700--Sobic003G101500 Sobic010G277500 Sobic010G277500 Sobic004G258700--Sobic010G277500 Sobic004G258700--Sobic007G065400 Sobic004G258700--Sobic007G161000 Sobic004G258700--Sobic009G040600 Sobic008G113100--Sobic004G258700 Sobic008G113100--Sobic008G028700 Sobic005G064000 Sobic005G064000 Sobic008G113100--Sobic005G064000 Sobic008G113100--Sobic007G065400 Sobic008G113100--Sobic001G456900 Sobic008G113100--Sobic009G024000 Sobic008G113100--Sobic009G040600 Sobic008G113100--Sobic004G208900 Sobic008G113100--Sobic004G039200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.