Gene annotation
Transcriptome id Sobic.004G258700.3,Sobic.004G258700.2,Sobic.004G258700.1
Synonym Sb04g029710
Functional annotation PHD-finger family protein, expressed
UniProt C6JRK6 , A0A194YRL5
Pfam -
Panther DB PTHR22880 PTHR22880:SF151
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G20280 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os02g48810.1 : PHD-finger family protein, expressed
MaizeGDB (Corn) Zm00025a021833 , Zm00025a032589
Brachypodium KQK01053
Barley HORVU6Hr1G070870.2 , HORVU6Hr1G070870.3 , HORVU6Hr1G070870.4 , HORVU6Hr1G070870.1
Wheat TraesCS6A02G282700 , TraesCS6B02G311000 , TraesCS6D02G263200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G113100 protein binding protein, putative, expressed -
2 Sobic.008G028700 SET domain containing protein, expressed -
3 Sobic.001G456900 expressed protein -
4 Sobic.003G148000 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
5 Sobic.003G101500 dnaJ domain containing protein, expressed -
6 Sobic.010G277500 expressed protein -
7 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
8 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
9 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
10 Sobic.001G036050 - -
11 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
12 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
13 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
14 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
15 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein
16 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
17 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
18 Sobic.006G079400 - -
19 Sobic.002G180666 - -
20 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1


Gene co-expression network
sample Sobic004G258700 Sobic004G258700 Sobic008G113100 Sobic008G113100 Sobic004G258700--Sobic008G113100 Sobic008G028700 Sobic008G028700 Sobic004G258700--Sobic008G028700 Sobic001G456900 Sobic001G456900 Sobic004G258700--Sobic001G456900 Sobic003G148000 Sobic003G148000 Sobic004G258700--Sobic003G148000 Sobic003G101500 Sobic003G101500 Sobic004G258700--Sobic003G101500 Sobic010G277500 Sobic010G277500 Sobic004G258700--Sobic010G277500 Sobic007G065400 Sobic007G065400 Sobic004G258700--Sobic007G065400 Sobic007G161000 Sobic007G161000 Sobic004G258700--Sobic007G161000 Sobic009G040600 Sobic009G040600 Sobic004G258700--Sobic009G040600 Sobic008G113100--Sobic004G258700 Sobic008G113100--Sobic008G028700 Sobic005G064000 Sobic005G064000 Sobic008G113100--Sobic005G064000 Sobic008G113100--Sobic007G065400 Sobic008G113100--Sobic001G456900 Sobic009G024000 Sobic009G024000 Sobic008G113100--Sobic009G024000 Sobic008G113100--Sobic009G040600 Sobic004G208900 Sobic004G208900 Sobic008G113100--Sobic004G208900 Sobic004G039200 Sobic004G039200 Sobic008G113100--Sobic004G039200 Sobic010G279450 Sobic010G279450 Sobic008G028700--Sobic010G279450 Sobic008G028700--Sobic009G040600 Sobic004G009600 Sobic004G009600 Sobic008G028700--Sobic004G009600 Sobic008G028700--Sobic004G258700 Sobic008G028700--Sobic007G065400 Sobic010G139000 Sobic010G139000 Sobic008G028700--Sobic010G139000 Sobic002G006900 Sobic002G006900 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G028700--Sobic008G113100 Sobic001G036050 Sobic001G036050 Sobic001G456900--Sobic001G036050 Sobic001G456900--Sobic010G139000 Sobic001G456900--Sobic004G258700 Sobic001G456900--Sobic008G113100 Sobic001G456900--Sobic008G028700 Sobic002G180666 Sobic002G180666 Sobic001G456900--Sobic002G180666 Sobic001G311500 Sobic001G311500 Sobic001G456900--Sobic001G311500 Sobic003G398700 Sobic003G398700 Sobic001G456900--Sobic003G398700 Sobic001G456900--Sobic003G101500 Sobic005G144400 Sobic005G144400 Sobic003G148000--Sobic005G144400 Sobic003G148000--Sobic002G180666 Sobic003G148000--Sobic002G145101 Sobic006G048500 Sobic006G048500 Sobic003G148000--Sobic006G048500 Sobic002G243900 Sobic002G243900 Sobic003G148000--Sobic002G243900 Sobic001G214300 Sobic001G214300 Sobic003G148000--Sobic001G214300 Sobic007G096600 Sobic007G096600 Sobic003G148000--Sobic007G096600 Sobic003G429650 Sobic003G429650 Sobic003G148000--Sobic003G429650 Sobic003G148000--Sobic004G258700 Sobic003G101500--Sobic004G039200 Sobic003G101500--Sobic004G258700 Sobic003G101500--Sobic007G161000 Sobic009G260500 Sobic009G260500 Sobic003G101500--Sobic009G260500 Sobic007G054400 Sobic007G054400 Sobic003G101500--Sobic007G054400 Sobic003G101500--Sobic001G456900 Sobic003G101500--Sobic008G113100 Sobic003G101500--Sobic008G028700 Sobic003G101500--Sobic009G024000 Sobic010G277500--Sobic004G208900 Sobic006G209850 Sobic006G209850 Sobic010G277500--Sobic006G209850 Sobic010G277500--Sobic007G065400 Sobic010G277500--Sobic009G260500 Sobic003G280800 Sobic003G280800 Sobic010G277500--Sobic003G280800 Sobic010G277500--Sobic004G009600 Sobic010G277500--Sobic008G028700 Sobic010G277500--Sobic004G258700 Sobic006G216800 Sobic006G216800 Sobic010G277500--Sobic006G216800 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic008G009700 Sobic008G009700 Sobic007G065400--Sobic008G009700 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic003G119000 Sobic003G119000 Sobic007G065400--Sobic003G119000 Sobic003G372700 Sobic003G372700 Sobic007G065400--Sobic003G372700 Sobic007G065400--Sobic008G028700 Sobic007G161000--Sobic004G039200 Sobic007G117400 Sobic007G117400 Sobic007G161000--Sobic007G117400 Sobic007G161000--Sobic009G024000 Sobic007G161000--Sobic010G139000 Sobic006G182900 Sobic006G182900 Sobic007G161000--Sobic006G182900 Sobic002G309600 Sobic002G309600 Sobic007G161000--Sobic002G309600 Sobic004G314000 Sobic004G314000 Sobic007G161000--Sobic004G314000 Sobic002G134200 Sobic002G134200 Sobic007G161000--Sobic002G134200 Sobic007G161000--Sobic008G028700 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic008G047800 Sobic008G047800 Sobic009G040600--Sobic008G047800 Sobic009G040600--Sobic004G208900 Sobic005G112300 Sobic005G112300 Sobic009G040600--Sobic005G112300 Sobic009G040600--Sobic007G065400 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400
Octagon: transcription factors


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