Gene annotation
Transcriptome id Sobic.008G028700.1
Synonym SDG25, ATXR7, Sb08g002530
Functional annotation SET domain containing protein, expressed
UniProt A0A1B6PAZ8
Pfam PF00856
Panther DB PTHR22884 PTHR22884:SF353
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G42400 : SET domain protein 25
RAP-DB (Rice) LOC_Os12g41900.1 : SET domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053804
Brachypodium PNT62331 , PNT62329 , PNT62330
Barley -
Wheat TraesCS5A02G042700 , TraesCS5D02G051200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
2 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
3 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
4 Sobic.004G258700 PHD-finger family protein, expressed -
5 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
6 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
7 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
8 Sobic.002G145101 - -
9 Sobic.008G113100 protein binding protein, putative, expressed -
10 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein
11 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
12 Sobic.010G277500 expressed protein -
13 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
14 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
15 Sobic.001G456900 expressed protein -
16 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
17 Sobic.003G148000 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
18 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
19 Sobic.001G363500 DIRP family protein, putative, expressed -
20 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1


Gene co-expression network
sample Sobic008G028700 Sobic008G028700 Sobic010G279450 Sobic010G279450 Sobic008G028700--Sobic010G279450 Sobic009G040600 Sobic009G040600 Sobic008G028700--Sobic009G040600 Sobic004G009600 Sobic004G009600 Sobic008G028700--Sobic004G009600 Sobic004G258700 Sobic004G258700 Sobic008G028700--Sobic004G258700 Sobic007G065400 Sobic007G065400 Sobic008G028700--Sobic007G065400 Sobic010G139000 Sobic010G139000 Sobic008G028700--Sobic010G139000 Sobic002G006900 Sobic002G006900 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G113100 Sobic008G113100 Sobic008G028700--Sobic008G113100 Sobic005G112300 Sobic005G112300 Sobic010G279450--Sobic005G112300 Sobic010G279450--Sobic010G139000 Sobic002G405800 Sobic002G405800 Sobic010G279450--Sobic002G405800 Sobic004G314000 Sobic004G314000 Sobic010G279450--Sobic004G314000 Sobic003G059750 Sobic003G059750 Sobic010G279450--Sobic003G059750 Sobic010G279450--Sobic008G028700 Sobic001G363500 Sobic001G363500 Sobic010G279450--Sobic001G363500 Sobic010G279450--Sobic004G009600 Sobic010G247800 Sobic010G247800 Sobic010G279450--Sobic010G247800 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic008G047800 Sobic008G047800 Sobic009G040600--Sobic008G047800 Sobic004G208900 Sobic004G208900 Sobic009G040600--Sobic004G208900 Sobic009G040600--Sobic005G112300 Sobic009G040600--Sobic007G065400 Sobic009G040600--Sobic008G028700 Sobic002G309600 Sobic002G309600 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400 Sobic004G009600--Sobic009G040600 Sobic004G009600--Sobic008G028700 Sobic009G260500 Sobic009G260500 Sobic004G009600--Sobic009G260500 Sobic004G009600--Sobic010G279450 Sobic004G009600--Sobic002G309600 Sobic007G117400 Sobic007G117400 Sobic004G009600--Sobic007G117400 Sobic003G293200 Sobic003G293200 Sobic004G009600--Sobic003G293200 Sobic004G009600--Sobic001G363500 Sobic010G277500 Sobic010G277500 Sobic004G009600--Sobic010G277500 Sobic004G258700--Sobic008G113100 Sobic004G258700--Sobic008G028700 Sobic001G456900 Sobic001G456900 Sobic004G258700--Sobic001G456900 Sobic003G148000 Sobic003G148000 Sobic004G258700--Sobic003G148000 Sobic003G101500 Sobic003G101500 Sobic004G258700--Sobic003G101500 Sobic004G258700--Sobic010G277500 Sobic004G258700--Sobic007G065400 Sobic007G161000 Sobic007G161000 Sobic004G258700--Sobic007G161000 Sobic004G258700--Sobic009G040600 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic008G009700 Sobic008G009700 Sobic007G065400--Sobic008G009700 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic003G119000 Sobic003G119000 Sobic007G065400--Sobic003G119000 Sobic003G372700 Sobic003G372700 Sobic007G065400--Sobic003G372700 Sobic007G065400--Sobic008G028700 Sobic010G139000--Sobic004G314000 Sobic010G139000--Sobic005G112300 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic001G311500 Sobic001G311500 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G112100 Sobic010G112100 Sobic010G139000--Sobic010G112100 Sobic010G010700 Sobic010G010700 Sobic010G139000--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic010G139000--Sobic005G008800 Sobic002G006900--Sobic008G047800 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic001G155000 Sobic001G155000 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic001G512700 Sobic001G512700 Sobic002G006900--Sobic001G512700 Sobic002G145101--Sobic003G148000 Sobic006G048500 Sobic006G048500 Sobic002G145101--Sobic006G048500 Sobic002G180666 Sobic002G180666 Sobic002G145101--Sobic002G180666 Sobic002G243900 Sobic002G243900 Sobic002G145101--Sobic002G243900 Sobic002G145101--Sobic008G028700 Sobic004G007100 Sobic004G007100 Sobic002G145101--Sobic004G007100 Sobic006G079400 Sobic006G079400 Sobic002G145101--Sobic006G079400 Sobic006G032500 Sobic006G032500 Sobic002G145101--Sobic006G032500 Sobic005G144400 Sobic005G144400 Sobic002G145101--Sobic005G144400 Sobic008G113100--Sobic004G258700 Sobic008G113100--Sobic008G028700 Sobic005G064000 Sobic005G064000 Sobic008G113100--Sobic005G064000 Sobic008G113100--Sobic007G065400 Sobic008G113100--Sobic001G456900 Sobic009G024000 Sobic009G024000 Sobic008G113100--Sobic009G024000 Sobic008G113100--Sobic009G040600 Sobic008G113100--Sobic004G208900 Sobic004G039200 Sobic004G039200 Sobic008G113100--Sobic004G039200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.