Gene annotation
Transcriptome id Sobic.007G074600.2,Sobic.007G074600.4,Sobic.007G074600.1,Sobic.007G074600.3
Synonym
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt A0A1Z5R9K4 , A0A1B6PG82 , A0A1Z5R8N1 , A0A1Z5R9E2
Pfam PF13371 PF13181 PF00515 PF13181 PF14559 PF13181 PF14559
Panther DB PTHR23082
NCBI CDD KOG2076; RNA polymerase III transcription factor TFIIIC
KEGG Orthology K15201; GTP3C3, general transcription factor 3C polypeptide 3 (transcription factor C subunit 4)
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G17680 : tetratricopeptide repeat (TPR)-containing protein
RAP-DB (Rice) LOC_Os11g16540.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a029919
Brachypodium -
Barley -
Wheat TraesCS5A02G383100
Populus -


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cDNA sequences
Sobic.007G074600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G028700 SET domain containing protein, expressed -
2 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
3 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
4 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
5 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
6 Sobic.004G314000 expressed protein -
7 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
8 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
9 Sobic.002G042800 expressed protein -
10 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
11 Sobic.004G258700 PHD-finger family protein, expressed -
12 Sobic.003G101500 dnaJ domain containing protein, expressed -
13 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
14 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
15 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
16 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein
17 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
18 Sobic.010G277500 expressed protein -
19 Sobic.003G052200 G-patch domain containing protein, expressed -
20 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11


Gene co-expression network
sample Sobic007G074600 Sobic007G074600 Sobic008G028700 Sobic008G028700 Sobic007G074600--Sobic008G028700 Sobic009G260500 Sobic009G260500 Sobic007G074600--Sobic009G260500 Sobic010G139000 Sobic010G139000 Sobic007G074600--Sobic010G139000 Sobic007G161000 Sobic007G161000 Sobic007G074600--Sobic007G161000 Sobic004G209600 Sobic004G209600 Sobic007G074600--Sobic004G209600 Sobic004G314000 Sobic004G314000 Sobic007G074600--Sobic004G314000 Sobic010G279450 Sobic010G279450 Sobic007G074600--Sobic010G279450 Sobic004G009600 Sobic004G009600 Sobic007G074600--Sobic004G009600 Sobic002G042800 Sobic002G042800 Sobic007G074600--Sobic002G042800 Sobic008G028700--Sobic010G279450 Sobic009G040600 Sobic009G040600 Sobic008G028700--Sobic009G040600 Sobic008G028700--Sobic004G009600 Sobic004G258700 Sobic004G258700 Sobic008G028700--Sobic004G258700 Sobic007G065400 Sobic007G065400 Sobic008G028700--Sobic007G065400 Sobic008G028700--Sobic010G139000 Sobic002G006900 Sobic002G006900 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G113100 Sobic008G113100 Sobic008G028700--Sobic008G113100 Sobic001G219600 Sobic001G219600 Sobic009G260500--Sobic001G219600 Sobic009G260500--Sobic004G009600 Sobic010G277500 Sobic010G277500 Sobic009G260500--Sobic010G277500 Sobic008G009700 Sobic008G009700 Sobic009G260500--Sobic008G009700 Sobic009G260500--Sobic010G139000 Sobic009G260500--Sobic008G028700 Sobic009G260500--Sobic009G040600 Sobic002G309600 Sobic002G309600 Sobic009G260500--Sobic002G309600 Sobic001G311500 Sobic001G311500 Sobic009G260500--Sobic001G311500 Sobic010G139000--Sobic004G314000 Sobic005G112300 Sobic005G112300 Sobic010G139000--Sobic005G112300 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G112100 Sobic010G112100 Sobic010G139000--Sobic010G112100 Sobic010G010700 Sobic010G010700 Sobic010G139000--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic010G139000--Sobic005G008800 Sobic004G039200 Sobic004G039200 Sobic007G161000--Sobic004G039200 Sobic007G117400 Sobic007G117400 Sobic007G161000--Sobic007G117400 Sobic009G024000 Sobic009G024000 Sobic007G161000--Sobic009G024000 Sobic007G161000--Sobic010G139000 Sobic006G182900 Sobic006G182900 Sobic007G161000--Sobic006G182900 Sobic007G161000--Sobic002G309600 Sobic007G161000--Sobic004G314000 Sobic002G134200 Sobic002G134200 Sobic007G161000--Sobic002G134200 Sobic007G161000--Sobic008G028700 Sobic004G209600--Sobic010G139000 Sobic004G209600--Sobic004G314000 Sobic004G209600--Sobic010G010700 Sobic004G209600--Sobic007G117400 Sobic004G209600--Sobic005G008800 Sobic004G209600--Sobic002G134200 Sobic004G209600--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic004G209600--Sobic004G242400 Sobic003G280800 Sobic003G280800 Sobic004G209600--Sobic003G280800 Sobic004G314000--Sobic010G139000 Sobic004G314000--Sobic005G008800 Sobic004G314000--Sobic005G112300 Sobic004G314000--Sobic010G279450 Sobic004G314000--Sobic004G242400 Sobic004G314000--Sobic010G206900 Sobic003G401600 Sobic003G401600 Sobic004G314000--Sobic003G401600 Sobic004G314000--Sobic002G309600 Sobic004G314000--Sobic009G040600 Sobic010G279450--Sobic005G112300 Sobic010G279450--Sobic010G139000 Sobic002G405800 Sobic002G405800 Sobic010G279450--Sobic002G405800 Sobic010G279450--Sobic004G314000 Sobic003G059750 Sobic003G059750 Sobic010G279450--Sobic003G059750 Sobic010G279450--Sobic008G028700 Sobic001G363500 Sobic001G363500 Sobic010G279450--Sobic001G363500 Sobic010G279450--Sobic004G009600 Sobic010G247800 Sobic010G247800 Sobic010G279450--Sobic010G247800 Sobic004G009600--Sobic009G040600 Sobic004G009600--Sobic008G028700 Sobic004G009600--Sobic009G260500 Sobic004G009600--Sobic010G279450 Sobic004G009600--Sobic002G309600 Sobic004G009600--Sobic007G117400 Sobic003G293200 Sobic003G293200 Sobic004G009600--Sobic003G293200 Sobic004G009600--Sobic001G363500 Sobic004G009600--Sobic010G277500 Sobic002G042800--Sobic008G028700 Sobic001G456900 Sobic001G456900 Sobic002G042800--Sobic001G456900 Sobic006G216100 Sobic006G216100 Sobic002G042800--Sobic006G216100 Sobic002G408200 Sobic002G408200 Sobic002G042800--Sobic002G408200 Sobic001G094600 Sobic001G094600 Sobic002G042800--Sobic001G094600 Sobic010G243900 Sobic010G243900 Sobic002G042800--Sobic010G243900 Sobic002G042800--Sobic010G279450 Sobic002G042800--Sobic008G113100 Sobic002G103600 Sobic002G103600 Sobic002G042800--Sobic002G103600
Octagon: transcription factors


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