Gene annotation
Transcriptome id Sobic.001G094600.1
Synonym Sb01g008465
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6QI47
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF794
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G04750 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g53170.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a008099
Brachypodium KQK13272
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G103600 glycosyl transferase, group 1 domain containing protein, expressed K03857: PIGA, phosphatidylinositol N-acetylglucosaminyltransferase subunit A
2 Sobic.002G042800 expressed protein -
3 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
4 Sobic.008G028700 SET domain containing protein, expressed -
5 Sobic.003G444800 expressed protein -
6 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
7 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
8 Sobic.009G247400 PX domain containing protein, putative, expressed K17925: sorting nexin-13
9 Sobic.003G052200 G-patch domain containing protein, expressed -
10 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
11 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
12 Sobic.004G023000 SAC9, putative, expressed -
13 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
14 Sobic.004G156666 - -
15 Sobic.004G314000 expressed protein -
16 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
17 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
18 Sobic.002G408200 sec8 exocyst complex component specific domain containing protein, expressed K06111: EXOC4, exocyst complex component 4
19 Sobic.K028600 expressed protein -
20 Sobic.001G456900 expressed protein -


Gene co-expression network
sample Sobic001G094600 Sobic001G094600 Sobic002G103600 Sobic002G103600 Sobic001G094600--Sobic002G103600 Sobic002G042800 Sobic002G042800 Sobic001G094600--Sobic002G042800 Sobic010G279450 Sobic010G279450 Sobic001G094600--Sobic010G279450 Sobic008G028700 Sobic008G028700 Sobic001G094600--Sobic008G028700 Sobic003G444800 Sobic003G444800 Sobic001G094600--Sobic003G444800 Sobic001G311500 Sobic001G311500 Sobic001G094600--Sobic001G311500 Sobic003G095900 Sobic003G095900 Sobic001G094600--Sobic003G095900 Sobic009G247400 Sobic009G247400 Sobic001G094600--Sobic009G247400 Sobic003G052200 Sobic003G052200 Sobic001G094600--Sobic003G052200 Sobic002G103600--Sobic003G444800 Sobic005G013200 Sobic005G013200 Sobic002G103600--Sobic005G013200 SobicK028600 SobicK028600 Sobic002G103600--SobicK028600 Sobic003G059750 Sobic003G059750 Sobic002G103600--Sobic003G059750 Sobic002G103600--Sobic001G311500 Sobic002G103600--Sobic009G247400 Sobic002G408200 Sobic002G408200 Sobic002G103600--Sobic002G408200 Sobic002G103600--Sobic008G028700 Sobic007G042400 Sobic007G042400 Sobic002G103600--Sobic007G042400 Sobic002G042800--Sobic008G028700 Sobic001G456900 Sobic001G456900 Sobic002G042800--Sobic001G456900 Sobic006G216100 Sobic006G216100 Sobic002G042800--Sobic006G216100 Sobic002G042800--Sobic002G408200 Sobic002G042800--Sobic001G094600 Sobic010G243900 Sobic010G243900 Sobic002G042800--Sobic010G243900 Sobic002G042800--Sobic010G279450 Sobic008G113100 Sobic008G113100 Sobic002G042800--Sobic008G113100 Sobic002G042800--Sobic002G103600 Sobic005G112300 Sobic005G112300 Sobic010G279450--Sobic005G112300 Sobic010G139000 Sobic010G139000 Sobic010G279450--Sobic010G139000 Sobic002G405800 Sobic002G405800 Sobic010G279450--Sobic002G405800 Sobic004G314000 Sobic004G314000 Sobic010G279450--Sobic004G314000 Sobic010G279450--Sobic003G059750 Sobic010G279450--Sobic008G028700 Sobic001G363500 Sobic001G363500 Sobic010G279450--Sobic001G363500 Sobic004G009600 Sobic004G009600 Sobic010G279450--Sobic004G009600 Sobic010G247800 Sobic010G247800 Sobic010G279450--Sobic010G247800 Sobic008G028700--Sobic010G279450 Sobic009G040600 Sobic009G040600 Sobic008G028700--Sobic009G040600 Sobic008G028700--Sobic004G009600 Sobic004G258700 Sobic004G258700 Sobic008G028700--Sobic004G258700 Sobic007G065400 Sobic007G065400 Sobic008G028700--Sobic007G065400 Sobic008G028700--Sobic010G139000 Sobic002G006900 Sobic002G006900 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G028700--Sobic008G113100 Sobic003G444800--SobicK028600 Sobic003G444800--Sobic003G059750 Sobic003G444800--Sobic002G103600 Sobic004G357100 Sobic004G357100 Sobic003G444800--Sobic004G357100 Sobic003G444800--Sobic007G042400 Sobic002G112700 Sobic002G112700 Sobic003G444800--Sobic002G112700 Sobic003G444800--Sobic010G279450 Sobic006G234700 Sobic006G234700 Sobic003G444800--Sobic006G234700 Sobic001G376200 Sobic001G376200 Sobic003G444800--Sobic001G376200 Sobic001G311500--Sobic010G139000 Sobic001G311500--Sobic009G247400 Sobic001G311500--Sobic005G112300 Sobic001G311500--Sobic003G059750 Sobic008G009700 Sobic008G009700 Sobic001G311500--Sobic008G009700 Sobic001G311500--Sobic004G314000 Sobic001G311500--Sobic010G279450 Sobic001G311500--Sobic008G028700 Sobic001G311500--Sobic001G363500 Sobic004G242400 Sobic004G242400 Sobic003G095900--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic003G095900--Sobic001G433800 Sobic002G133300 Sobic002G133300 Sobic003G095900--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic003G095900--Sobic001G089600 Sobic006G088200 Sobic006G088200 Sobic003G095900--Sobic006G088200 Sobic003G360400 Sobic003G360400 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic004G276400 Sobic004G276400 Sobic003G095900--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic003G095900--Sobic001G289800 Sobic009G247400--Sobic001G311500 Sobic009G247400--Sobic010G279450 Sobic009G260500 Sobic009G260500 Sobic009G247400--Sobic009G260500 Sobic009G247400--Sobic004G009600 Sobic001G214600 Sobic001G214600 Sobic009G247400--Sobic001G214600 Sobic009G247400--Sobic001G363500 Sobic001G219600 Sobic001G219600 Sobic009G247400--Sobic001G219600 Sobic002G317200 Sobic002G317200 Sobic009G247400--Sobic002G317200 Sobic009G247400--Sobic004G314000 Sobic009G126400 Sobic009G126400 Sobic003G052200--Sobic009G126400 Sobic004G208900 Sobic004G208900 Sobic003G052200--Sobic004G208900 Sobic001G222500 Sobic001G222500 Sobic003G052200--Sobic001G222500 Sobic003G052200--Sobic009G040600 Sobic008G162900 Sobic008G162900 Sobic003G052200--Sobic008G162900 Sobic003G052200--Sobic008G028700 Sobic003G052200--Sobic004G009600 Sobic003G052200--Sobic010G279450 Sobic009G024000 Sobic009G024000 Sobic003G052200--Sobic009G024000
Octagon: transcription factors


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