Gene annotation
Transcriptome id Sobic.002G213300.2,Sobic.002G213300.1
Synonym Sb02g025575
Functional annotation CAAX amino terminal protease family protein, putative, expressed
UniProt A0A1W0W575 , C5XDL8
Pfam PF02517
Panther DB PTHR10794 PTHR10794:SF47
NCBI CDD KOG1838; Alpha/beta hydrolase
KEGG Orthology K07052; uncharacterized protein
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT2G03140 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os09g26570.1,LOC_Os02g43340.1 : hydrolase, alpha/beta fold family domain containing protein, expressed,CAAX amino terminal protease family protein, putative, expressed
MaizeGDB (Corn) Zm00025a047124
Brachypodium KQJ90362 , KQJ90360 , KQJ90361 , PNT72676
Barley -
Wheat TraesCS5B02G213400 , TraesCS5B02G213400 , TraesCS5D02G222800 , TraesCS5D02G222800 , TraesCS5B02G212800 , TraesCS5B02G212800 , TraesCS5B02G212800 , TraesCS5A02G211000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
2 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
3 Sobic.009G074400 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
4 Sobic.004G356700 oligopeptidase, putative, expressed K01414: oligopeptidase A
5 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
6 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
7 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
8 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
9 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
10 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
11 Sobic.004G131800 sirohydrochlorin ferrochelatase, putative, expressed -
12 Sobic.009G256400 ATP binding protein, putative, expressed K15192: BTAF1, TATA-binding protein-associated factor
13 Sobic.010G009200 AMP-binding enzyme family protein, expressed K00142: acyl-CoA synthetase
14 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
15 Sobic.003G316500 expressed protein -
16 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
17 Sobic.006G050700 disease resistance RPP13-like protein 1, putative, expressed -
18 Sobic.002G344000 expressed protein -
19 Sobic.010G014100 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
20 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -


Gene co-expression network
sample Sobic002G213300 Sobic002G213300 Sobic004G001500 Sobic004G001500 Sobic002G213300--Sobic004G001500 Sobic001G534700 Sobic001G534700 Sobic002G213300--Sobic001G534700 Sobic009G074400 Sobic009G074400 Sobic002G213300--Sobic009G074400 Sobic004G356700 Sobic004G356700 Sobic002G213300--Sobic004G356700 Sobic001G370900 Sobic001G370900 Sobic002G213300--Sobic001G370900 Sobic001G230000 Sobic001G230000 Sobic002G213300--Sobic001G230000 Sobic008G001200 Sobic008G001200 Sobic002G213300--Sobic008G001200 Sobic003G198800 Sobic003G198800 Sobic002G213300--Sobic003G198800 Sobic003G155100 Sobic003G155100 Sobic002G213300--Sobic003G155100 Sobic002G146300 Sobic002G146300 Sobic004G001500--Sobic002G146300 Sobic003G043200 Sobic003G043200 Sobic004G001500--Sobic003G043200 Sobic005G187300 Sobic005G187300 Sobic004G001500--Sobic005G187300 Sobic004G001500--Sobic001G370900 Sobic001G457800 Sobic001G457800 Sobic004G001500--Sobic001G457800 Sobic009G256400 Sobic009G256400 Sobic004G001500--Sobic009G256400 Sobic003G166750 Sobic003G166750 Sobic004G001500--Sobic003G166750 Sobic004G001500--Sobic004G356700 Sobic001G527800 Sobic001G527800 Sobic004G001500--Sobic001G527800 Sobic010G206900 Sobic010G206900 Sobic001G534700--Sobic010G206900 Sobic001G365900 Sobic001G365900 Sobic001G534700--Sobic001G365900 Sobic002G411600 Sobic002G411600 Sobic001G534700--Sobic002G411600 Sobic003G316500 Sobic003G316500 Sobic001G534700--Sobic003G316500 Sobic009G165700 Sobic009G165700 Sobic001G534700--Sobic009G165700 Sobic004G034900 Sobic004G034900 Sobic001G534700--Sobic004G034900 Sobic002G008900 Sobic002G008900 Sobic001G534700--Sobic002G008900 Sobic003G422500 Sobic003G422500 Sobic001G534700--Sobic003G422500 Sobic001G534700--Sobic008G001200 Sobic009G074400--Sobic003G316500 Sobic009G074400--Sobic001G534700 Sobic009G074400--Sobic003G155100 Sobic009G074400--Sobic003G198800 Sobic002G311100 Sobic002G311100 Sobic009G074400--Sobic002G311100 Sobic006G051800 Sobic006G051800 Sobic009G074400--Sobic006G051800 Sobic006G219600 Sobic006G219600 Sobic009G074400--Sobic006G219600 Sobic009G074400--Sobic008G001200 Sobic009G074400--Sobic004G001500 Sobic004G356700--Sobic008G001200 Sobic001G194200 Sobic001G194200 Sobic004G356700--Sobic001G194200 Sobic004G356700--Sobic002G146300 Sobic004G356700--Sobic004G001500 Sobic004G356700--Sobic009G256400 Sobic004G244900 Sobic004G244900 Sobic004G356700--Sobic004G244900 Sobic004G356700--Sobic003G155100 Sobic004G356700--Sobic006G219600 Sobic004G334300 Sobic004G334300 Sobic004G356700--Sobic004G334300 Sobic008G098900 Sobic008G098900 Sobic001G370900--Sobic008G098900 Sobic005G001000 Sobic005G001000 Sobic001G370900--Sobic005G001000 Sobic001G370900--Sobic009G256400 Sobic001G370900--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic001G370900--Sobic003G205200 Sobic001G370900--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic001G370900--Sobic004G276400 Sobic001G370900--Sobic008G001200 Sobic001G370900--Sobic001G457800 Sobic001G230000--Sobic010G206900 Sobic001G230000--Sobic003G155100 Sobic001G230000--Sobic008G001200 Sobic001G230000--Sobic004G276400 Sobic004G223000 Sobic004G223000 Sobic001G230000--Sobic004G223000 Sobic009G256300 Sobic009G256300 Sobic001G230000--Sobic009G256300 Sobic010G010700 Sobic010G010700 Sobic001G230000--Sobic010G010700 Sobic001G298900 Sobic001G298900 Sobic001G230000--Sobic001G298900 Sobic008G044100 Sobic008G044100 Sobic001G230000--Sobic008G044100 Sobic008G001200--Sobic003G155100 Sobic008G001200--Sobic010G206900 Sobic008G001200--Sobic009G256400 Sobic008G001200--Sobic003G205200 Sobic008G001200--Sobic010G010700 Sobic008G001200--Sobic001G194200 Sobic008G001200--Sobic005G001000 Sobic008G001200--Sobic004G276400 Sobic004G174200 Sobic004G174200 Sobic008G001200--Sobic004G174200 Sobic003G198800--Sobic001G534700 Sobic003G198800--Sobic009G074400 Sobic003G275700 Sobic003G275700 Sobic003G198800--Sobic003G275700 Sobic006G257800 Sobic006G257800 Sobic003G198800--Sobic006G257800 Sobic003G198800--Sobic003G155100 Sobic001G128300 Sobic001G128300 Sobic003G198800--Sobic001G128300 Sobic001G481900 Sobic001G481900 Sobic003G198800--Sobic001G481900 Sobic008G151100 Sobic008G151100 Sobic003G198800--Sobic008G151100 Sobic003G198800--Sobic002G411600 Sobic003G155100--Sobic008G001200 Sobic003G155100--Sobic006G219600 Sobic003G155100--Sobic010G206900 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic003G155100--Sobic001G194200 Sobic003G155100--Sobic010G010700 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900
Octagon: transcription factors


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