Gene annotation
Transcriptome id Sobic.010G009200.8,Sobic.010G009200.7,Sobic.010G009200.6,Sobic.010G009200.12,Sobic.010G009200.9,Sobic.010G009200.5,Sobic.010G009200.11,Sobic.010G009200.10
Synonym Sb10g001030
Functional annotation AMP-binding enzyme family protein, expressed
UniProt A0A1W0VQZ0 , A0A1W0VR07 , A0A1W0VQZ6 , A0A1W0VR03
Pfam PF00501 PF13360 PF13193 PF13193 PF13360 PF00501 PF13570 PF13570 PF00501 PF13360 PF13193 PF13193 PF13360 PF13570 PF00501 PF13193 PF13360 PF00501
Panther DB PTHR24096 PTHR24096:SF190 PTHR24095 PTHR24095:SF185 PTHR24095:SF185 PTHR24095
NCBI CDD KOG4649; PQQ (pyrrolo-quinoline quinone) repeat protein
KEGG Orthology K00142; acyl-CoA synthetase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity GO:0003824catalytic activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT5G35930 : AMP-dependent synthetase and ligase family protein
RAP-DB (Rice) LOC_Os06g02160.4,LOC_Os06g02160.3,LOC_Os06g02160.2,LOC_Os06g02160.1 : AMP-binding enzyme family protein, expressed
MaizeGDB (Corn) Zm00025a050265
Brachypodium KQK19747
Barley HORVU7Hr1G006370.26 , HORVU7Hr1G006370.11 , HORVU7Hr1G006370.10 , HORVU7Hr1G006370.13 , HORVU7Hr1G006370.12 , HORVU7Hr1G006370.15 , HORVU7Hr1G006370.14 , HORVU7Hr1G006370.17 , HORVU7Hr1G006370.16 , HORVU7Hr1G006370.19 , HORVU7Hr1G006370.18 , HORVU7Hr1G006370.24 , HORVU7Hr1G006370.42 , HORVU7Hr1G006370.43 , HORVU7Hr1G006370.40 , HORVU7Hr1G006370.41 , HORVU7Hr1G006370.46 , HORVU7Hr1G006370.44 , HORVU7Hr1G006370.27 , HORVU7Hr1G006370.20 , HORVU7Hr1G006370.22 , HORVU7Hr1G006370.23 , HORVU7Hr1G006370.39 , HORVU7Hr1G006370.38 , HORVU7Hr1G006370.37 , HORVU7Hr1G006370.36 , HORVU7Hr1G006370.35 , HORVU7Hr1G006370.34 , HORVU7Hr1G006370.33 , HORVU7Hr1G006370.32 , HORVU7Hr1G006370.31 , HORVU7Hr1G006370.30 , HORVU7Hr1G006370.5 , HORVU7Hr1G006370.4 , HORVU7Hr1G006370.7 , HORVU7Hr1G006370.6 , HORVU7Hr1G006370.1 , HORVU7Hr1G006370.3 , HORVU7Hr1G006370.2 , HORVU7Hr1G006370.9 , HORVU7Hr1G006370.8 , HORVU7Hr1G006370.28 , HORVU7Hr1G006370.29 , HORVU7Hr1G006370.25 , HORVU7Hr1G006370.21 , HORVU7Hr1G006370.47 , HORVU7Hr1G006370.45
Wheat TraesCS7A02G033700 , TraesCS7A02G033700 , TraesCS7A02G011700 , TraesCS7A02G011700 , TraesCS7A02G011700 , TraesCS3D02G491300 , TraesCS3D02G491300 , TraesCS3D02G491300 , TraesCS7D02G030200 , TraesCS7D02G030200 , TraesCS7D02G030200 , TraesCS7B02G448600 , TraesCS7B02G448600
Populus -


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cDNA sequences
Sobic.010G009200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
2 Sobic.008G087866 - -
3 Sobic.009G165700 SAC3/GANP family protein, putative, expressed -
4 Sobic.003G313500 MATH domain containing protein, expressed -
5 Sobic.010G227100 BTB/POZ domain containing protein, putative, expressed -
6 Sobic.001G050200 expressed protein -
7 Sobic.003G196300 DNA binding protein, putative, expressed -
8 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
9 Sobic.002G370200 agenet domain-containing protein, putative, expressed -
10 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
11 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
12 Sobic.001G196500 plus-3 domain containing protein, putative, expressed -
13 Sobic.003G422500 expressed protein -
14 Sobic.002G243800 BPI/LBP family protein At3g20270 precursor, putative, expressed -
15 Sobic.001G540400 expressed protein -
16 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
17 Sobic.004G091100 nuclear protein ZAP-related, putative, expressed K17602: YLP motif-containing protein 1
18 Sobic.003G166750 - K15188: cyclin T
19 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
20 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7


Gene co-expression network
sample Sobic010G009200 Sobic010G009200 Sobic001G534700 Sobic001G534700 Sobic010G009200--Sobic001G534700 Sobic008G087866 Sobic008G087866 Sobic010G009200--Sobic008G087866 Sobic009G165700 Sobic009G165700 Sobic010G009200--Sobic009G165700 Sobic003G313500 Sobic003G313500 Sobic010G009200--Sobic003G313500 Sobic010G227100 Sobic010G227100 Sobic010G009200--Sobic010G227100 Sobic001G050200 Sobic001G050200 Sobic010G009200--Sobic001G050200 Sobic003G196300 Sobic003G196300 Sobic010G009200--Sobic003G196300 Sobic005G001000 Sobic005G001000 Sobic010G009200--Sobic005G001000 Sobic002G370200 Sobic002G370200 Sobic010G009200--Sobic002G370200 Sobic010G206900 Sobic010G206900 Sobic001G534700--Sobic010G206900 Sobic001G365900 Sobic001G365900 Sobic001G534700--Sobic001G365900 Sobic002G411600 Sobic002G411600 Sobic001G534700--Sobic002G411600 Sobic003G316500 Sobic003G316500 Sobic001G534700--Sobic003G316500 Sobic001G534700--Sobic009G165700 Sobic004G034900 Sobic004G034900 Sobic001G534700--Sobic004G034900 Sobic002G008900 Sobic002G008900 Sobic001G534700--Sobic002G008900 Sobic003G422500 Sobic003G422500 Sobic001G534700--Sobic003G422500 Sobic008G001200 Sobic008G001200 Sobic001G534700--Sobic008G001200 Sobic008G087866--Sobic009G165700 Sobic008G087866--Sobic003G422500 Sobic008G087866--Sobic008G001200 Sobic001G117200 Sobic001G117200 Sobic008G087866--Sobic001G117200 Sobic003G166750 Sobic003G166750 Sobic008G087866--Sobic003G166750 Sobic008G087866--Sobic005G001000 Sobic003G170900 Sobic003G170900 Sobic008G087866--Sobic003G170900 Sobic001G194200 Sobic001G194200 Sobic008G087866--Sobic001G194200 Sobic001G370900 Sobic001G370900 Sobic008G087866--Sobic001G370900 Sobic009G165700--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic009G165700--Sobic010G247800 Sobic009G165700--Sobic010G206900 Sobic009G165700--Sobic003G166750 Sobic009G165700--Sobic008G087866 Sobic001G451400 Sobic001G451400 Sobic009G165700--Sobic001G451400 Sobic009G165700--Sobic003G170900 Sobic009G165700--Sobic001G534700 Sobic009G165700--Sobic008G001200 Sobic009G191000 Sobic009G191000 Sobic003G313500--Sobic009G191000 Sobic003G313500--Sobic003G422500 Sobic003G313500--Sobic002G411600 Sobic001G540400 Sobic001G540400 Sobic003G313500--Sobic001G540400 Sobic003G313500--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic003G313500--Sobic001G289600 Sobic009G053900 Sobic009G053900 Sobic003G313500--Sobic009G053900 Sobic003G313500--Sobic002G008900 Sobic003G313500--Sobic001G365900 Sobic002G243800 Sobic002G243800 Sobic010G227100--Sobic002G243800 Sobic002G383600 Sobic002G383600 Sobic010G227100--Sobic002G383600 Sobic003G372500 Sobic003G372500 Sobic010G227100--Sobic003G372500 Sobic006G275100 Sobic006G275100 Sobic010G227100--Sobic006G275100 Sobic007G190000 Sobic007G190000 Sobic010G227100--Sobic007G190000 Sobic007G075400 Sobic007G075400 Sobic010G227100--Sobic007G075400 Sobic002G146300 Sobic002G146300 Sobic010G227100--Sobic002G146300 Sobic009G074400 Sobic009G074400 Sobic010G227100--Sobic009G074400 Sobic010G227100--Sobic009G053900 Sobic002G419800 Sobic002G419800 Sobic001G050200--Sobic002G419800 Sobic001G050200--Sobic003G422500 Sobic009G027300 Sobic009G027300 Sobic001G050200--Sobic009G027300 Sobic003G247300 Sobic003G247300 Sobic001G050200--Sobic003G247300 Sobic001G050200--Sobic009G191000 Sobic001G050200--Sobic007G075400 Sobic004G269200 Sobic004G269200 Sobic001G050200--Sobic004G269200 Sobic004G331100 Sobic004G331100 Sobic001G050200--Sobic004G331100 Sobic003G101400 Sobic003G101400 Sobic001G050200--Sobic003G101400 Sobic003G196300--Sobic010G206900 Sobic003G196300--Sobic004G034900 Sobic003G196300--Sobic001G194200 Sobic007G063000 Sobic007G063000 Sobic003G196300--Sobic007G063000 Sobic001G289800 Sobic001G289800 Sobic003G196300--Sobic001G289800 Sobic004G276400 Sobic004G276400 Sobic003G196300--Sobic004G276400 Sobic003G196300--Sobic010G247800 Sobic009G256300 Sobic009G256300 Sobic003G196300--Sobic009G256300 Sobic003G196300--Sobic001G534700 Sobic005G001000--Sobic001G194200 Sobic005G001000--Sobic002G008900 Sobic005G001000--Sobic001G370900 Sobic003G205200 Sobic003G205200 Sobic005G001000--Sobic003G205200 Sobic004G291900 Sobic004G291900 Sobic005G001000--Sobic004G291900 Sobic003G186000 Sobic003G186000 Sobic005G001000--Sobic003G186000 Sobic005G001000--Sobic008G001200 Sobic005G001000--Sobic003G422500 Sobic009G256400 Sobic009G256400 Sobic005G001000--Sobic009G256400 Sobic002G370200--Sobic009G165700 Sobic002G370200--Sobic003G196300 Sobic002G370200--Sobic001G534700 Sobic002G370200--Sobic003G316500 Sobic001G128300 Sobic001G128300 Sobic002G370200--Sobic001G128300 Sobic002G370200--Sobic010G247800 Sobic002G042600 Sobic002G042600 Sobic002G370200--Sobic002G042600 Sobic003G362600 Sobic003G362600 Sobic002G370200--Sobic003G362600 Sobic001G043100 Sobic001G043100 Sobic002G370200--Sobic001G043100
Octagon: transcription factors


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