Gene annotation
Transcriptome id Sobic.003G105900.1,Sobic.003G105900.2
Synonym Sb03g008890
Functional annotation expressed protein
UniProt A0A1B6Q2I0 , A0A1B6Q2H9
Pfam PF13176
Panther DB PTHR14140 PTHR14140:SF31
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G54360 : zinc ion binding
RAP-DB (Rice) LOC_Os02g55200.1 : expressed protein
MaizeGDB (Corn) Zm00025a000863 , Zm00025a023842
Brachypodium KQK17335 , KQK13278 , KQK13276 , KQK13277
Barley HORVU3Hr1G014190.4 , HORVU3Hr1G014190.2 , HORVU3Hr1G014190.3 , HORVU3Hr1G014190.1
Wheat TraesCS3B02G093400 , TraesCS3D02G079000 , TraesCS3D02G079000 , TraesCS3A02G078500
Populus -


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cDNA sequences
Sobic.003G105900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G040400 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
2 Sobic.003G298200 dehydrogenase, putative, expressed -
3 Sobic.003G264800 expressed protein -
4 Sobic.009G162600 OsFtsH8 FtsH protease, homologue of AtFtsH3/10, expressed K08956: AFG3 family protein
5 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
6 Sobic.005G038500 pentatricopeptide containing protein, putative, expressed -
7 Sobic.003G029500 zinc finger, C3HC4 type family protein, expressed -
8 Sobic.009G103000 ubiquitin family protein, putative, expressed -
9 Sobic.007G079400 cytidylyltransferase domain containing protein, expressed K00967: ethanolamine-phosphate cytidylyltransferase
10 Sobic.002G043800 regulator of chromosome condensation/beta-lactamase-inhibitor protein II, putative, expressed -
11 Sobic.002G072400 zeta-carotene desaturase, chloroplast/chromoplast precursor, putative, expressed K00514: ZDS, zeta-carotene desaturase
12 Sobic.003G003450 - K01177: beta-amylase
13 Sobic.005G187300 lipin, N-terminal conserved region family protein, expressed K15728: phosphatidate phosphatase LPIN
14 Sobic.004G146600 lipase, putative, expressed -
15 Sobic.007G010800 similar to Os01g0104100 protein(PubMedID : 29862293)@expressed protein -
16 Sobic.002G081400 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
17 Sobic.002G349100 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
18 Sobic.004G317700 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
19 Sobic.001G261545 - K01669: deoxyribodipyrimidine photo-lyase
20 Sobic.010G132600 selenoprotein O, putative, expressed -


Gene co-expression network
sample Sobic003G105900 Sobic003G105900 Sobic009G040400 Sobic009G040400 Sobic003G105900--Sobic009G040400 Sobic003G298200 Sobic003G298200 Sobic003G105900--Sobic003G298200 Sobic003G264800 Sobic003G264800 Sobic003G105900--Sobic003G264800 Sobic009G162600 Sobic009G162600 Sobic003G105900--Sobic009G162600 Sobic003G107500 Sobic003G107500 Sobic003G105900--Sobic003G107500 Sobic005G038500 Sobic005G038500 Sobic003G105900--Sobic005G038500 Sobic003G029500 Sobic003G029500 Sobic003G105900--Sobic003G029500 Sobic009G103000 Sobic009G103000 Sobic003G105900--Sobic009G103000 Sobic007G079400 Sobic007G079400 Sobic003G105900--Sobic007G079400 Sobic007G010800 Sobic007G010800 Sobic009G040400--Sobic007G010800 Sobic005G132000 Sobic005G132000 Sobic009G040400--Sobic005G132000 Sobic009G040400--Sobic003G105900 Sobic005G201000 Sobic005G201000 Sobic009G040400--Sobic005G201000 Sobic009G040400--Sobic003G029500 Sobic010G092350 Sobic010G092350 Sobic009G040400--Sobic010G092350 Sobic002G275200 Sobic002G275200 Sobic009G040400--Sobic002G275200 Sobic002G356900 Sobic002G356900 Sobic009G040400--Sobic002G356900 Sobic002G138100 Sobic002G138100 Sobic009G040400--Sobic002G138100 Sobic010G150100 Sobic010G150100 Sobic003G298200--Sobic010G150100 Sobic004G086300 Sobic004G086300 Sobic003G298200--Sobic004G086300 Sobic003G150500 Sobic003G150500 Sobic003G298200--Sobic003G150500 Sobic003G298200--Sobic003G107500 Sobic003G298200--Sobic003G105900 Sobic003G298200--Sobic005G201000 Sobic003G298200--Sobic009G040400 Sobic002G043800 Sobic002G043800 Sobic003G298200--Sobic002G043800 Sobic003G298200--Sobic009G103000 Sobic003G186900 Sobic003G186900 Sobic003G264800--Sobic003G186900 Sobic003G003450 Sobic003G003450 Sobic003G264800--Sobic003G003450 Sobic006G232600 Sobic006G232600 Sobic003G264800--Sobic006G232600 Sobic005G106600 Sobic005G106600 Sobic003G264800--Sobic005G106600 Sobic002G072400 Sobic002G072400 Sobic003G264800--Sobic002G072400 Sobic003G264800--Sobic009G103000 Sobic004G238200 Sobic004G238200 Sobic003G264800--Sobic004G238200 Sobic004G207400 Sobic004G207400 Sobic003G264800--Sobic004G207400 Sobic004G337400 Sobic004G337400 Sobic003G264800--Sobic004G337400 Sobic003G340600 Sobic003G340600 Sobic009G162600--Sobic003G340600 Sobic002G349100 Sobic002G349100 Sobic009G162600--Sobic002G349100 Sobic009G162600--Sobic009G103000 Sobic009G162600--Sobic002G072400 Sobic002G275100 Sobic002G275100 Sobic009G162600--Sobic002G275100 Sobic009G162600--Sobic003G105900 Sobic008G089900 Sobic008G089900 Sobic009G162600--Sobic008G089900 Sobic004G300100 Sobic004G300100 Sobic009G162600--Sobic004G300100 Sobic009G162600--Sobic003G029500 Sobic004G001500 Sobic004G001500 Sobic003G107500--Sobic004G001500 Sobic003G107500--Sobic002G043800 Sobic002G383600 Sobic002G383600 Sobic003G107500--Sobic002G383600 Sobic001G310100 Sobic001G310100 Sobic003G107500--Sobic001G310100 Sobic004G146600 Sobic004G146600 Sobic003G107500--Sobic004G146600 Sobic003G107500--Sobic003G298200 Sobic003G373500 Sobic003G373500 Sobic003G107500--Sobic003G373500 Sobic005G187300 Sobic005G187300 Sobic003G107500--Sobic005G187300 Sobic010G014100 Sobic010G014100 Sobic003G107500--Sobic010G014100 Sobic005G038500--Sobic004G146600 Sobic010G132600 Sobic010G132600 Sobic005G038500--Sobic010G132600 Sobic005G038500--Sobic003G107500 Sobic005G038500--Sobic003G105900 Sobic005G038500--Sobic005G187300 Sobic005G038500--Sobic010G014100 Sobic003G310300 Sobic003G310300 Sobic005G038500--Sobic003G310300 Sobic001G094600 Sobic001G094600 Sobic005G038500--Sobic001G094600 Sobic005G038500--Sobic004G001500 Sobic003G029500--Sobic005G201000 Sobic003G029500--Sobic005G132000 Sobic006G051800 Sobic006G051800 Sobic003G029500--Sobic006G051800 Sobic003G029500--Sobic009G040400 Sobic003G029500--Sobic003G003450 Sobic004G312600 Sobic004G312600 Sobic003G029500--Sobic004G312600 Sobic003G029500--Sobic010G092350 Sobic003G029500--Sobic005G106600 Sobic003G220100 Sobic003G220100 Sobic003G029500--Sobic003G220100 Sobic007G087100 Sobic007G087100 Sobic009G103000--Sobic007G087100 Sobic001G077300 Sobic001G077300 Sobic009G103000--Sobic001G077300 Sobic009G170200 Sobic009G170200 Sobic009G103000--Sobic009G170200 Sobic009G073900 Sobic009G073900 Sobic009G103000--Sobic009G073900 Sobic009G103000--Sobic003G003450 Sobic009G103000--Sobic006G232600 Sobic006G213700 Sobic006G213700 Sobic009G103000--Sobic006G213700 Sobic001G378100 Sobic001G378100 Sobic009G103000--Sobic001G378100 Sobic006G212800 Sobic006G212800 Sobic009G103000--Sobic006G212800 Sobic007G108400 Sobic007G108400 Sobic007G079400--Sobic007G108400 Sobic007G079400--Sobic003G105900 Sobic001G057700 Sobic001G057700 Sobic007G079400--Sobic001G057700 Sobic007G079400--Sobic003G264800 Sobic002G401000 Sobic002G401000 Sobic007G079400--Sobic002G401000 Sobic003G373600 Sobic003G373600 Sobic007G079400--Sobic003G373600 Sobic002G393700 Sobic002G393700 Sobic007G079400--Sobic002G393700 Sobic005G062700 Sobic005G062700 Sobic007G079400--Sobic005G062700 Sobic004G344000 Sobic004G344000 Sobic007G079400--Sobic004G344000
Octagon: transcription factors


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