Gene annotation
Transcriptome id Sobic.001G261545.2,Sobic.001G261545.5,Sobic.001G261545.3,Sobic.001G261545.1,Sobic.001G261545.4
Synonym -
Functional annotation -
UniProt A0A1Z5S7N2 , A0A1Z5S7L8 , A0A109NDM7 , A0A1Z5S7L3 , C6JRR1 , A0A1Z5S7L0 , C6JRR0 , A0A1Z5S7N6
Pfam PF03441 PF00875
Panther DB PTHR10211 PTHR10211:SF0
NCBI CDD KOG0133; Deoxyribodipyrimidine photolyase/cryptochrome
KEGG Orthology K01669; deoxyribodipyrimidine photo-lyase
Gene Ontology GO:0006281; DNA repair GO:0003904deoxyribodipyrimidine photo-lyase activity


Orthologs (automatic annotation)
TAIR AT1G12370 : photolyase 1
RAP-DB (Rice) LOC_Os10g08580.1 : FAD binding domain of DNA photolyase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a003857
Brachypodium KQJ96346 , KQJ96347 , KQJ96348 , PNT67209
Barley HORVU7Hr1G055930.13 , HORVU7Hr1G055930.12 , HORVU7Hr1G055930.11 , HORVU7Hr1G055930.10 , HORVU7Hr1G055930.17 , HORVU7Hr1G055930.16 , HORVU7Hr1G055930.15 , HORVU7Hr1G055930.14 , HORVU7Hr1G055930.19 , HORVU7Hr1G055930.18 , HORVU7Hr1G055930.22 , HORVU7Hr1G055930.20 , HORVU7Hr1G055930.21 , HORVU7Hr1G055930.3 , HORVU7Hr1G055930.2 , HORVU7Hr1G055930.1 , HORVU7Hr1G055930.7 , HORVU7Hr1G055930.6 , HORVU7Hr1G055930.5 , HORVU7Hr1G055930.4 , HORVU7Hr1G055930.9 , HORVU7Hr1G055930.8
Wheat TraesCS7B02G164500 , TraesCS7D02G267200 , TraesCS7A02G267500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G136200 expressed protein -
2 Sobic.010G171600 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04733: interleukin-1 receptor-associated kinase 4
3 Sobic.005G100600 bZIP transcription factor domain containing protein, expressed -
4 Sobic.009G103000 ubiquitin family protein, putative, expressed -
5 Sobic.003G264800 expressed protein -
6 Sobic.007G058001 - K15429: TRM5, tRNA (guanine37-N1)-methyltransferase
7 Sobic.001G085600 ABC transporter, ATP-binding protein, putative, expressed -
8 Sobic.006G232600 amine oxidase, flavin-containing, domain containing protein, expressed K02293: PDS, 15-cis-phytoene desaturase
9 Sobic.001G436400 immature colon carcinoma transcript 1 protein precursor, putative, expressed K15033: peptidyl-tRNA hydrolase ICT1
10 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
11 Sobic.007G103400 expressed protein -
12 Sobic.003G003450 - K01177: beta-amylase
13 Sobic.002G198300 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.006G158100 tRNA-dihydrouridine synthase, putative, expressed K05543: tRNA-dihydrouridine synthase 2
15 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.001G076400 H-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
17 Sobic.003G005000 expressed protein -
18 Sobic.006G038500 tRNA-dihydrouridine synthase, putative, expressed K05539: tRNA-dihydrouridine synthase A
19 Sobic.003G105900 expressed protein -
20 Sobic.003G345500 ureidoglycolate hydrolase, putative, expressed -


Gene co-expression network
sample Sobic001G261545 Sobic001G261545 Sobic007G136200 Sobic007G136200 Sobic001G261545--Sobic007G136200 Sobic010G171600 Sobic010G171600 Sobic001G261545--Sobic010G171600 Sobic005G100600 Sobic005G100600 Sobic001G261545--Sobic005G100600 Sobic009G103000 Sobic009G103000 Sobic001G261545--Sobic009G103000 Sobic003G264800 Sobic003G264800 Sobic001G261545--Sobic003G264800 Sobic007G058001 Sobic007G058001 Sobic001G261545--Sobic007G058001 Sobic001G085600 Sobic001G085600 Sobic001G261545--Sobic001G085600 Sobic006G232600 Sobic006G232600 Sobic001G261545--Sobic006G232600 Sobic001G436400 Sobic001G436400 Sobic001G261545--Sobic001G436400 Sobic006G158100 Sobic006G158100 Sobic007G136200--Sobic006G158100 Sobic010G043800 Sobic010G043800 Sobic007G136200--Sobic010G043800 Sobic001G504400 Sobic001G504400 Sobic007G136200--Sobic001G504400 Sobic010G002700 Sobic010G002700 Sobic007G136200--Sobic010G002700 Sobic007G103400 Sobic007G103400 Sobic007G136200--Sobic007G103400 Sobic001G169900 Sobic001G169900 Sobic007G136200--Sobic001G169900 Sobic004G337400 Sobic004G337400 Sobic007G136200--Sobic004G337400 Sobic007G108900 Sobic007G108900 Sobic007G136200--Sobic007G108900 Sobic001G378100 Sobic001G378100 Sobic007G136200--Sobic001G378100 Sobic001G500600 Sobic001G500600 Sobic010G171600--Sobic001G500600 Sobic006G233700 Sobic006G233700 Sobic010G171600--Sobic006G233700 Sobic003G233700 Sobic003G233700 Sobic010G171600--Sobic003G233700 Sobic010G171600--Sobic007G103400 Sobic001G516901 Sobic001G516901 Sobic010G171600--Sobic001G516901 Sobic006G197300 Sobic006G197300 Sobic010G171600--Sobic006G197300 Sobic008G074000 Sobic008G074000 Sobic010G171600--Sobic008G074000 Sobic003G287900 Sobic003G287900 Sobic010G171600--Sobic003G287900 Sobic004G336200 Sobic004G336200 Sobic010G171600--Sobic004G336200 Sobic006G092000 Sobic006G092000 Sobic005G100600--Sobic006G092000 Sobic007G136800 Sobic007G136800 Sobic005G100600--Sobic007G136800 Sobic005G100600--Sobic001G085600 Sobic003G110800 Sobic003G110800 Sobic005G100600--Sobic003G110800 Sobic001G465700 Sobic001G465700 Sobic005G100600--Sobic001G465700 Sobic006G038500 Sobic006G038500 Sobic005G100600--Sobic006G038500 Sobic006G173600 Sobic006G173600 Sobic005G100600--Sobic006G173600 Sobic005G100600--Sobic001G261545 Sobic002G091600 Sobic002G091600 Sobic005G100600--Sobic002G091600 Sobic007G087100 Sobic007G087100 Sobic009G103000--Sobic007G087100 Sobic001G077300 Sobic001G077300 Sobic009G103000--Sobic001G077300 Sobic009G170200 Sobic009G170200 Sobic009G103000--Sobic009G170200 Sobic009G073900 Sobic009G073900 Sobic009G103000--Sobic009G073900 Sobic003G003450 Sobic003G003450 Sobic009G103000--Sobic003G003450 Sobic009G103000--Sobic006G232600 Sobic006G213700 Sobic006G213700 Sobic009G103000--Sobic006G213700 Sobic009G103000--Sobic001G378100 Sobic006G212800 Sobic006G212800 Sobic009G103000--Sobic006G212800 Sobic003G186900 Sobic003G186900 Sobic003G264800--Sobic003G186900 Sobic003G264800--Sobic003G003450 Sobic003G264800--Sobic006G232600 Sobic005G106600 Sobic005G106600 Sobic003G264800--Sobic005G106600 Sobic002G072400 Sobic002G072400 Sobic003G264800--Sobic002G072400 Sobic003G264800--Sobic009G103000 Sobic004G238200 Sobic004G238200 Sobic003G264800--Sobic004G238200 Sobic004G207400 Sobic004G207400 Sobic003G264800--Sobic004G207400 Sobic003G264800--Sobic004G337400 Sobic007G058001--Sobic010G043800 Sobic002G005600 Sobic002G005600 Sobic007G058001--Sobic002G005600 Sobic007G058001--Sobic001G504400 Sobic003G345500 Sobic003G345500 Sobic007G058001--Sobic003G345500 Sobic007G058001--Sobic006G232600 Sobic007G135800 Sobic007G135800 Sobic007G058001--Sobic007G135800 Sobic001G217900 Sobic001G217900 Sobic007G058001--Sobic001G217900 Sobic007G058001--Sobic003G003450 Sobic009G207900 Sobic009G207900 Sobic007G058001--Sobic009G207900 Sobic001G085600--Sobic005G100600 Sobic004G193700 Sobic004G193700 Sobic001G085600--Sobic004G193700 Sobic001G085600--Sobic001G261545 Sobic001G085600--Sobic006G092000 Sobic002G309900 Sobic002G309900 Sobic001G085600--Sobic002G309900 Sobic001G203400 Sobic001G203400 Sobic001G085600--Sobic001G203400 Sobic002G218500 Sobic002G218500 Sobic001G085600--Sobic002G218500 Sobic005G198000 Sobic005G198000 Sobic001G085600--Sobic005G198000 Sobic003G319800 Sobic003G319800 Sobic001G085600--Sobic003G319800 Sobic006G232600--Sobic009G170200 Sobic006G232600--Sobic007G087100 Sobic006G232600--Sobic003G003450 Sobic006G232600--Sobic001G378100 Sobic006G232600--Sobic009G073900 Sobic006G232600--Sobic006G233700 Sobic006G232600--Sobic009G103000 Sobic006G232600--Sobic001G077300 Sobic002G081400 Sobic002G081400 Sobic006G232600--Sobic002G081400 Sobic004G103300 Sobic004G103300 Sobic001G436400--Sobic004G103300 Sobic005G028800 Sobic005G028800 Sobic001G436400--Sobic005G028800 Sobic007G166300 Sobic007G166300 Sobic001G436400--Sobic007G166300 Sobic001G436400--Sobic007G108900 Sobic001G509200 Sobic001G509200 Sobic001G436400--Sobic001G509200 Sobic001G015200 Sobic001G015200 Sobic001G436400--Sobic001G015200 Sobic001G393300 Sobic001G393300 Sobic001G436400--Sobic001G393300 Sobic004G124400 Sobic004G124400 Sobic001G436400--Sobic004G124400 Sobic002G298800 Sobic002G298800 Sobic001G436400--Sobic002G298800
Octagon: transcription factors


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