Gene annotation
Transcriptome id Sobic.006G158100.1
Synonym Sb06g023500
Functional annotation tRNA-dihydrouridine synthase, putative, expressed
UniProt A0A1Z5REZ2
Pfam PF01207
Panther DB PTHR11082 PTHR11082:SF4
NCBI CDD KOG2335; tRNA-dihydrouridine synthase
KEGG Orthology K05543; tRNA-dihydrouridine synthase 2
Gene Ontology GO:0017150; tRNA dihydrouridine synthase activity GO:0008033tRNA processing


Orthologs (automatic annotation)
TAIR AT3G49640 : Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os04g44890.1 : tRNA-dihydrouridine synthase, putative, expressed
MaizeGDB (Corn) Zm00025a056574
Brachypodium KQJ83742 , PNT61546 , PNT61547 , PNT61544 , PNT61545 , PNT61542 , PNT61543 , PNT61541 , PNT61548
Barley HORVU2Hr1G091370.1 , HORVU2Hr1G091370.2 , HORVU2Hr1G091370.3 , HORVU2Hr1G091370.4 , HORVU2Hr1G091370.5 , HORVU2Hr1G091370.6 , HORVU2Hr1G091370.7
Wheat TraesCS2D02G368100 , TraesCS2D02G368100 , TraesCS2B02G388900 , TraesCS2B02G388900 , TraesCS2A02G371800 , TraesCS2A02G371800
Populus -


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cDNA sequences
Sobic.006G158100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G136200 expressed protein -
2 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein
3 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -
4 Sobic.001G504400 expressed protein -
5 Sobic.003G094100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
7 Sobic.010G067100 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
8 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
9 Sobic.003G185900 protein phosphatase 2C, putative, expressed -
10 Sobic.007G108900 APE1, putative, expressed -
11 Sobic.006G142600 lipase class 3 family protein, putative, expressed -
12 Sobic.004G356400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
14 Sobic.001G283100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed -
15 Sobic.010G002700 expressed protein -
16 Sobic.001G491000 ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed K01783: rpe, ribulose-phosphate 3-epimerase
17 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
18 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
19 Sobic.007G103400 expressed protein -
20 Sobic.003G398800 expressed protein -


Gene co-expression network
sample Sobic006G158100 Sobic006G158100 Sobic007G136200 Sobic007G136200 Sobic006G158100--Sobic007G136200 Sobic001G017300 Sobic001G017300 Sobic006G158100--Sobic001G017300 Sobic001G258200 Sobic001G258200 Sobic006G158100--Sobic001G258200 Sobic001G504400 Sobic001G504400 Sobic006G158100--Sobic001G504400 Sobic003G094100 Sobic003G094100 Sobic006G158100--Sobic003G094100 Sobic010G043800 Sobic010G043800 Sobic006G158100--Sobic010G043800 Sobic010G067100 Sobic010G067100 Sobic006G158100--Sobic010G067100 Sobic001G169900 Sobic001G169900 Sobic006G158100--Sobic001G169900 Sobic003G185900 Sobic003G185900 Sobic006G158100--Sobic003G185900 Sobic007G136200--Sobic006G158100 Sobic007G136200--Sobic010G043800 Sobic007G136200--Sobic001G504400 Sobic010G002700 Sobic010G002700 Sobic007G136200--Sobic010G002700 Sobic007G103400 Sobic007G103400 Sobic007G136200--Sobic007G103400 Sobic007G136200--Sobic001G169900 Sobic004G337400 Sobic004G337400 Sobic007G136200--Sobic004G337400 Sobic007G108900 Sobic007G108900 Sobic007G136200--Sobic007G108900 Sobic001G378100 Sobic001G378100 Sobic007G136200--Sobic001G378100 Sobic001G017300--Sobic006G158100 Sobic004G356400 Sobic004G356400 Sobic001G017300--Sobic004G356400 Sobic006G093800 Sobic006G093800 Sobic001G017300--Sobic006G093800 Sobic010G249700 Sobic010G249700 Sobic001G017300--Sobic010G249700 Sobic001G017300--Sobic007G136200 Sobic003G276300 Sobic003G276300 Sobic001G017300--Sobic003G276300 Sobic005G101200 Sobic005G101200 Sobic001G017300--Sobic005G101200 Sobic001G017300--Sobic001G169900 Sobic001G017300--Sobic010G002700 Sobic001G258200--Sobic003G185900 Sobic002G382700 Sobic002G382700 Sobic001G258200--Sobic002G382700 Sobic008G129900 Sobic008G129900 Sobic001G258200--Sobic008G129900 Sobic001G258200--Sobic001G504400 Sobic004G189800 Sobic004G189800 Sobic001G258200--Sobic004G189800 Sobic008G033000 Sobic008G033000 Sobic001G258200--Sobic008G033000 Sobic002G206300 Sobic002G206300 Sobic001G258200--Sobic002G206300 Sobic001G359300 Sobic001G359300 Sobic001G258200--Sobic001G359300 Sobic005G068700 Sobic005G068700 Sobic001G258200--Sobic005G068700 Sobic001G504400--Sobic002G206300 Sobic001G504400--Sobic007G103400 Sobic009G038701 Sobic009G038701 Sobic001G504400--Sobic009G038701 Sobic001G504400--Sobic003G185900 Sobic001G504400--Sobic001G258200 Sobic010G125833 Sobic010G125833 Sobic001G504400--Sobic010G125833 Sobic001G504400--Sobic008G033000 Sobic001G180200 Sobic001G180200 Sobic001G504400--Sobic001G180200 Sobic001G504400--Sobic001G378100 Sobic003G094100--Sobic007G108900 Sobic001G509200 Sobic001G509200 Sobic003G094100--Sobic001G509200 Sobic007G135800 Sobic007G135800 Sobic003G094100--Sobic007G135800 Sobic001G393300 Sobic001G393300 Sobic003G094100--Sobic001G393300 Sobic001G283100 Sobic001G283100 Sobic003G094100--Sobic001G283100 Sobic007G157300 Sobic007G157300 Sobic003G094100--Sobic007G157300 Sobic004G103300 Sobic004G103300 Sobic003G094100--Sobic004G103300 Sobic003G094100--Sobic001G180200 Sobic002G298800 Sobic002G298800 Sobic003G094100--Sobic002G298800 Sobic009G121000 Sobic009G121000 Sobic010G043800--Sobic009G121000 Sobic010G043800--Sobic007G136200 Sobic010G043800--Sobic001G504400 Sobic006G142600 Sobic006G142600 Sobic010G043800--Sobic006G142600 Sobic010G043800--Sobic010G002700 Sobic010G043800--Sobic006G158100 Sobic010G043800--Sobic007G103400 Sobic010G043800--Sobic001G169900 Sobic010G043800--Sobic001G378100 Sobic010G067100--Sobic003G185900 Sobic010G067100--Sobic001G504400 Sobic003G398800 Sobic003G398800 Sobic010G067100--Sobic003G398800 Sobic010G067100--Sobic001G258200 Sobic007G105500 Sobic007G105500 Sobic010G067100--Sobic007G105500 Sobic010G067100--Sobic006G158100 Sobic010G067100--Sobic002G206300 Sobic010G067100--Sobic009G038701 Sobic010G067100--Sobic008G033000 Sobic001G169900--Sobic010G002700 Sobic001G169900--Sobic006G158100 Sobic001G169900--Sobic010G043800 Sobic001G169900--Sobic007G136200 Sobic001G198100 Sobic001G198100 Sobic001G169900--Sobic001G198100 Sobic001G169900--Sobic006G142600 Sobic001G394800 Sobic001G394800 Sobic001G169900--Sobic001G394800 Sobic001G169900--Sobic001G017300 Sobic003G017100 Sobic003G017100 Sobic001G169900--Sobic003G017100 Sobic003G185900--Sobic008G033000 Sobic003G185900--Sobic001G504400 Sobic003G185900--Sobic001G258200 Sobic003G185900--Sobic010G067100 Sobic003G185900--Sobic007G105500 Sobic004G215800 Sobic004G215800 Sobic003G185900--Sobic004G215800 Sobic003G185900--Sobic005G068700 Sobic003G185900--Sobic009G038701 Sobic003G036200 Sobic003G036200 Sobic003G185900--Sobic003G036200
Octagon: transcription factors


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