Gene annotation
Transcriptome id Sobic.001G085600.1
Synonym ATTAP2, Sb01g007710, TAP2, ALS1
Functional annotation ABC transporter, ATP-binding protein, putative, expressed
UniProt C6JSU2 , Q8LKU6
Pfam PF00005 PF00664
Panther DB PTHR24221 PTHR24221:SF127
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT5G39040 : transporter associated with antigen processing protein 2
RAP-DB (Rice) LOC_Os03g54790.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a016780
Brachypodium KQK13137
Barley HORVU4Hr1G070910.1 , HORVU3Hr1G075120.2 , HORVU3Hr1G075120.1 , HORVU2Hr1G025350.1 , HORVU2Hr1G025350.3 , HORVU2Hr1G025350.2 , HORVU3Hr1G066640.2 , HORVU3Hr1G066640.1 , HORVU5Hr1G096000.4 , HORVU5Hr1G096000.6 , HORVU5Hr1G096000.7 , HORVU5Hr1G096000.1 , HORVU5Hr1G096000.2 , HORVU5Hr1G096000.8 , HORVU7Hr1G050570.4 , HORVU7Hr1G050570.1 , HORVU7Hr1G050570.2 , HORVU7Hr1G050570.3 , HORVU5Hr1G095990.10 , HORVU5Hr1G096000.3 , HORVU5Hr1G095990.9 , HORVU5Hr1G095990.8 , HORVU5Hr1G095990.3 , HORVU5Hr1G095990.2 , HORVU5Hr1G095990.1 , HORVU5Hr1G095990.7 , HORVU5Hr1G095990.6 , HORVU5Hr1G095990.5 , HORVU5Hr1G095990.4
Wheat TraesCS5A02G392600 , TraesCS5D02G402400 , TraesCS5D02G402400 , TraesCS5B02G397600 , TraesCS5B02G397600 , TraesCS5B02G397500 , TraesCS5A02G392700 , TraesCS5D02G402600 , TraesCS5D02G402400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G100600 bZIP transcription factor domain containing protein, expressed -
2 Sobic.004G193700 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase
3 Sobic.001G261545 - K01669: deoxyribodipyrimidine photo-lyase
4 Sobic.006G092000 expressed protein K18172: COX assembly mitochondrial protein 2
5 Sobic.002G309900 cupin 2, conserved barrel domain protein, putative, expressed K14977: ylbA, (S)-ureidoglycine aminohydrolase
6 Sobic.001G203400 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
7 Sobic.002G218500 lecithine cholesterol acyltransferase, putative, expressed K00679: phospholipid:diacylglycerol acyltransferase
8 Sobic.005G198000 armadillo/beta-catenin-like repeat family protein, expressed -
9 Sobic.003G319800 bHelix-loop-helix transcription factor, putative, expressed -
10 Sobic.009G168600 low photochemical bleaching 1 protein, putative, expressed -
11 Sobic.002G091600 methyltransferase, putative, expressed -
12 Sobic.007G171400 low molecular weight protein-tyrosine-phosphatase slr0328, putative, expressed K01104: protein-tyrosine phosphatase
13 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
14 Sobic.004G269000 syntaxin, putative, expressed K08488: syntaxin 7
15 Sobic.010G032900 transketolase, putative, expressed K01662: 1-deoxy-D-xylulose-5-phosphate synthase
16 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
17 Sobic.002G131200 Ser/Thr protein phosphatase family protein, putative, expressed -
18 Sobic.007G136200 expressed protein -
19 Sobic.008G062400 similar to Diphosphonucleotide phosphatase 1(PubMedID : 29862293)@inositol-1-monophosphatase, putative, expressed K15422: 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase
20 Sobic.003G011300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1


Gene co-expression network
sample Sobic001G085600 Sobic001G085600 Sobic005G100600 Sobic005G100600 Sobic001G085600--Sobic005G100600 Sobic004G193700 Sobic004G193700 Sobic001G085600--Sobic004G193700 Sobic001G261545 Sobic001G261545 Sobic001G085600--Sobic001G261545 Sobic006G092000 Sobic006G092000 Sobic001G085600--Sobic006G092000 Sobic002G309900 Sobic002G309900 Sobic001G085600--Sobic002G309900 Sobic001G203400 Sobic001G203400 Sobic001G085600--Sobic001G203400 Sobic002G218500 Sobic002G218500 Sobic001G085600--Sobic002G218500 Sobic005G198000 Sobic005G198000 Sobic001G085600--Sobic005G198000 Sobic003G319800 Sobic003G319800 Sobic001G085600--Sobic003G319800 Sobic005G100600--Sobic006G092000 Sobic007G136800 Sobic007G136800 Sobic005G100600--Sobic007G136800 Sobic005G100600--Sobic001G085600 Sobic003G110800 Sobic003G110800 Sobic005G100600--Sobic003G110800 Sobic001G465700 Sobic001G465700 Sobic005G100600--Sobic001G465700 Sobic006G038500 Sobic006G038500 Sobic005G100600--Sobic006G038500 Sobic006G173600 Sobic006G173600 Sobic005G100600--Sobic006G173600 Sobic005G100600--Sobic001G261545 Sobic002G091600 Sobic002G091600 Sobic005G100600--Sobic002G091600 Sobic004G193700--Sobic002G091600 Sobic003G262200 Sobic003G262200 Sobic004G193700--Sobic003G262200 Sobic003G229300 Sobic003G229300 Sobic004G193700--Sobic003G229300 Sobic004G193700--Sobic006G092000 Sobic003G253600 Sobic003G253600 Sobic004G193700--Sobic003G253600 Sobic003G119600 Sobic003G119600 Sobic004G193700--Sobic003G119600 Sobic005G059800 Sobic005G059800 Sobic004G193700--Sobic005G059800 Sobic004G193700--Sobic001G085600 Sobic006G185100 Sobic006G185100 Sobic004G193700--Sobic006G185100 Sobic007G136200 Sobic007G136200 Sobic001G261545--Sobic007G136200 Sobic010G171600 Sobic010G171600 Sobic001G261545--Sobic010G171600 Sobic001G261545--Sobic005G100600 Sobic009G103000 Sobic009G103000 Sobic001G261545--Sobic009G103000 Sobic003G264800 Sobic003G264800 Sobic001G261545--Sobic003G264800 Sobic007G058001 Sobic007G058001 Sobic001G261545--Sobic007G058001 Sobic001G261545--Sobic001G085600 Sobic006G232600 Sobic006G232600 Sobic001G261545--Sobic006G232600 Sobic001G436400 Sobic001G436400 Sobic001G261545--Sobic001G436400 Sobic006G092000--Sobic003G110800 Sobic006G092000--Sobic005G100600 Sobic006G092000--Sobic004G193700 Sobic006G092000--Sobic005G059800 Sobic006G092000--Sobic003G229300 Sobic006G092000--Sobic006G173600 Sobic008G115900 Sobic008G115900 Sobic006G092000--Sobic008G115900 Sobic006G092000--Sobic002G091600 Sobic001G516901 Sobic001G516901 Sobic006G092000--Sobic001G516901 Sobic002G309900--Sobic002G091600 Sobic002G131200 Sobic002G131200 Sobic002G309900--Sobic002G131200 Sobic008G070800 Sobic008G070800 Sobic002G309900--Sobic008G070800 Sobic002G309900--Sobic001G085600 Sobic001G303100 Sobic001G303100 Sobic002G309900--Sobic001G303100 Sobic002G309900--Sobic006G092000 Sobic002G309900--Sobic005G100600 Sobic002G111200 Sobic002G111200 Sobic002G309900--Sobic002G111200 Sobic001G257700 Sobic001G257700 Sobic002G309900--Sobic001G257700 Sobic005G187300 Sobic005G187300 Sobic001G203400--Sobic005G187300 Sobic001G203400--Sobic001G085600 Sobic004G023100 Sobic004G023100 Sobic001G203400--Sobic004G023100 Sobic010G094900 Sobic010G094900 Sobic001G203400--Sobic010G094900 Sobic001G203400--Sobic001G261545 Sobic003G196300 Sobic003G196300 Sobic001G203400--Sobic003G196300 Sobic006G219600 Sobic006G219600 Sobic001G203400--Sobic006G219600 Sobic001G203400--Sobic005G059800 Sobic010G032900 Sobic010G032900 Sobic001G203400--Sobic010G032900 Sobic006G128300 Sobic006G128300 Sobic002G218500--Sobic006G128300 Sobic006G031800 Sobic006G031800 Sobic002G218500--Sobic006G031800 Sobic002G218500--Sobic006G038500 Sobic001G043800 Sobic001G043800 Sobic002G218500--Sobic001G043800 Sobic002G431300 Sobic002G431300 Sobic002G218500--Sobic002G431300 Sobic007G029700 Sobic007G029700 Sobic002G218500--Sobic007G029700 Sobic002G218500--Sobic001G516901 Sobic004G079800 Sobic004G079800 Sobic002G218500--Sobic004G079800 Sobic005G084800 Sobic005G084800 Sobic002G218500--Sobic005G084800 Sobic002G170200 Sobic002G170200 Sobic005G198000--Sobic002G170200 Sobic004G355700 Sobic004G355700 Sobic005G198000--Sobic004G355700 Sobic002G408200 Sobic002G408200 Sobic005G198000--Sobic002G408200 Sobic005G198000--Sobic001G085600 Sobic008G168300 Sobic008G168300 Sobic005G198000--Sobic008G168300 Sobic002G121600 Sobic002G121600 Sobic005G198000--Sobic002G121600 Sobic001G283600 Sobic001G283600 Sobic005G198000--Sobic001G283600 Sobic010G243900 Sobic010G243900 Sobic005G198000--Sobic010G243900 Sobic005G198000--Sobic010G032900 Sobic010G023700 Sobic010G023700 Sobic003G319800--Sobic010G023700 Sobic003G319800--Sobic001G085600 Sobic001G292700 Sobic001G292700 Sobic003G319800--Sobic001G292700 Sobic003G024300 Sobic003G024300 Sobic003G319800--Sobic003G024300 Sobic003G319800--Sobic007G136200 Sobic002G172700 Sobic002G172700 Sobic003G319800--Sobic002G172700 Sobic003G319800--Sobic005G100600 Sobic003G319800--Sobic001G261545 Sobic001G020100 Sobic001G020100 Sobic003G319800--Sobic001G020100
Octagon: transcription factors


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