Gene annotation
Transcriptome id Sobic.004G269000.2,Sobic.004G269000.1
Synonym VAM3, SGR3, ATVAM3, SYP22, Sb04g030690, ATSYP22
Functional annotation syntaxin, putative, expressed
UniProt A0A1Z5RP64 , C5Y0C8
Pfam PF14523 PF05739 PF14523
Panther DB PTHR19957 PTHR19957:SF135
NCBI CDD KOG0811; SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17
KEGG Orthology K08488; syntaxin 7
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G46860 : Syntaxin/t-SNARE family protein
RAP-DB (Rice) LOC_Os02g47440.1 : syntaxin, putative, expressed
MaizeGDB (Corn) Zm00025a021698
Brachypodium KQK00917
Barley HORVU6Hr1G041590.5 , HORVU6Hr1G041590.4 , HORVU6Hr1G041590.6 , HORVU6Hr1G041590.1 , HORVU6Hr1G041590.2 , HORVU6Hr1G068640.1
Wheat TraesCS6B02G298100 , TraesCS6B02G298100 , TraesCS6A02G271000 , TraesCS6D02G244100 , TraesCS6D02G244100 , TraesCS6D02G244100 , TraesCS6A02G271000 , TraesCS6B02G298100
Populus -


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cDNA sequences
Sobic.004G269000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G084500 ethylene-responsive protein related, putative, expressed -
2 Sobic.001G085600 ABC transporter, ATP-binding protein, putative, expressed -
3 Sobic.001G048100 OsAPRL5 adenosine 5\'-phosphosulfate reductase-like OsAPRL5, expressed -
4 Sobic.006G092000 expressed protein K18172: COX assembly mitochondrial protein 2
5 Sobic.003G386600 calreticulin precursor protein, putative, expressed K08057: calreticulin
6 Sobic.004G193700 ASC1, putative, expressed K04710: CERS1_2_3_4, ceramide synthetase
7 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
8 Sobic.002G218500 lecithine cholesterol acyltransferase, putative, expressed K00679: phospholipid:diacylglycerol acyltransferase
9 Sobic.005G100600 bZIP transcription factor domain containing protein, expressed -
10 Sobic.003G229300 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
11 Sobic.003G319800 bHelix-loop-helix transcription factor, putative, expressed -
12 Sobic.001G427300 glycosyl transferase, group 1 domain containing protein, expressed K06119: sulfoquinovosyltransferase
13 Sobic.001G332500 WRKY81, expressed -
14 Sobic.002G054300 ABC transporter, ATP-binding protein, putative, expressed K06184: ATP-binding cassette, subfamily F, member 1
15 Sobic.003G010400 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
16 Sobic.003G262200 E3 ubiquitin ligase, putative, expressed K16276: K16276, zinc finger protein-like protein
17 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
18 Sobic.004G174400 ZOS2-09 - C2H2 zinc finger protein, expressed -
19 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
20 Sobic.008G046500 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit


Gene co-expression network
sample Sobic004G269000 Sobic004G269000 Sobic009G084500 Sobic009G084500 Sobic004G269000--Sobic009G084500 Sobic001G085600 Sobic001G085600 Sobic004G269000--Sobic001G085600 Sobic001G048100 Sobic001G048100 Sobic004G269000--Sobic001G048100 Sobic006G092000 Sobic006G092000 Sobic004G269000--Sobic006G092000 Sobic003G386600 Sobic003G386600 Sobic004G269000--Sobic003G386600 Sobic004G193700 Sobic004G193700 Sobic004G269000--Sobic004G193700 Sobic007G136800 Sobic007G136800 Sobic004G269000--Sobic007G136800 Sobic002G218500 Sobic002G218500 Sobic004G269000--Sobic002G218500 Sobic005G100600 Sobic005G100600 Sobic004G269000--Sobic005G100600 Sobic009G084500--Sobic004G269000 Sobic009G084500--Sobic005G100600 Sobic009G084500--Sobic007G136800 Sobic001G332500 Sobic001G332500 Sobic009G084500--Sobic001G332500 Sobic006G173600 Sobic006G173600 Sobic009G084500--Sobic006G173600 Sobic004G174400 Sobic004G174400 Sobic009G084500--Sobic004G174400 Sobic010G186000 Sobic010G186000 Sobic009G084500--Sobic010G186000 Sobic009G084500--Sobic006G092000 Sobic009G084500--Sobic001G048100 Sobic001G085600--Sobic005G100600 Sobic001G085600--Sobic004G193700 Sobic001G261545 Sobic001G261545 Sobic001G085600--Sobic001G261545 Sobic001G085600--Sobic006G092000 Sobic002G309900 Sobic002G309900 Sobic001G085600--Sobic002G309900 Sobic001G203400 Sobic001G203400 Sobic001G085600--Sobic001G203400 Sobic001G085600--Sobic002G218500 Sobic005G198000 Sobic005G198000 Sobic001G085600--Sobic005G198000 Sobic003G319800 Sobic003G319800 Sobic001G085600--Sobic003G319800 Sobic001G080700 Sobic001G080700 Sobic001G048100--Sobic001G080700 Sobic010G184100 Sobic010G184100 Sobic001G048100--Sobic010G184100 Sobic009G165800 Sobic009G165800 Sobic001G048100--Sobic009G165800 Sobic004G121100 Sobic004G121100 Sobic001G048100--Sobic004G121100 Sobic007G171400 Sobic007G171400 Sobic001G048100--Sobic007G171400 Sobic010G251000 Sobic010G251000 Sobic001G048100--Sobic010G251000 Sobic004G040900 Sobic004G040900 Sobic001G048100--Sobic004G040900 Sobic003G264200 Sobic003G264200 Sobic001G048100--Sobic003G264200 Sobic001G048100--Sobic004G269000 Sobic003G110800 Sobic003G110800 Sobic006G092000--Sobic003G110800 Sobic006G092000--Sobic005G100600 Sobic006G092000--Sobic004G193700 Sobic005G059800 Sobic005G059800 Sobic006G092000--Sobic005G059800 Sobic003G229300 Sobic003G229300 Sobic006G092000--Sobic003G229300 Sobic006G092000--Sobic006G173600 Sobic008G115900 Sobic008G115900 Sobic006G092000--Sobic008G115900 Sobic002G091600 Sobic002G091600 Sobic006G092000--Sobic002G091600 Sobic001G516901 Sobic001G516901 Sobic006G092000--Sobic001G516901 Sobic005G222900 Sobic005G222900 Sobic003G386600--Sobic005G222900 Sobic005G188600 Sobic005G188600 Sobic003G386600--Sobic005G188600 Sobic003G386600--Sobic004G269000 Sobic006G228500 Sobic006G228500 Sobic003G386600--Sobic006G228500 Sobic001G427300 Sobic001G427300 Sobic003G386600--Sobic001G427300 Sobic010G005600 Sobic010G005600 Sobic003G386600--Sobic010G005600 Sobic001G035900 Sobic001G035900 Sobic003G386600--Sobic001G035900 Sobic001G098301 Sobic001G098301 Sobic003G386600--Sobic001G098301 Sobic003G386600--Sobic009G084500 Sobic004G193700--Sobic002G091600 Sobic003G262200 Sobic003G262200 Sobic004G193700--Sobic003G262200 Sobic004G193700--Sobic003G229300 Sobic004G193700--Sobic006G092000 Sobic003G253600 Sobic003G253600 Sobic004G193700--Sobic003G253600 Sobic003G119600 Sobic003G119600 Sobic004G193700--Sobic003G119600 Sobic004G193700--Sobic005G059800 Sobic004G193700--Sobic001G085600 Sobic006G185100 Sobic006G185100 Sobic004G193700--Sobic006G185100 Sobic003G398700 Sobic003G398700 Sobic007G136800--Sobic003G398700 Sobic010G126000 Sobic010G126000 Sobic007G136800--Sobic010G126000 Sobic003G168100 Sobic003G168100 Sobic007G136800--Sobic003G168100 Sobic001G375700 Sobic001G375700 Sobic007G136800--Sobic001G375700 Sobic006G031800 Sobic006G031800 Sobic007G136800--Sobic006G031800 Sobic007G136800--Sobic005G100600 Sobic001G043800 Sobic001G043800 Sobic007G136800--Sobic001G043800 Sobic003G011300 Sobic003G011300 Sobic007G136800--Sobic003G011300 Sobic010G032900 Sobic010G032900 Sobic007G136800--Sobic010G032900 Sobic006G128300 Sobic006G128300 Sobic002G218500--Sobic006G128300 Sobic002G218500--Sobic006G031800 Sobic006G038500 Sobic006G038500 Sobic002G218500--Sobic006G038500 Sobic002G218500--Sobic001G043800 Sobic002G431300 Sobic002G431300 Sobic002G218500--Sobic002G431300 Sobic007G029700 Sobic007G029700 Sobic002G218500--Sobic007G029700 Sobic002G218500--Sobic001G516901 Sobic004G079800 Sobic004G079800 Sobic002G218500--Sobic004G079800 Sobic005G084800 Sobic005G084800 Sobic002G218500--Sobic005G084800 Sobic005G100600--Sobic006G092000 Sobic005G100600--Sobic007G136800 Sobic005G100600--Sobic001G085600 Sobic005G100600--Sobic003G110800 Sobic001G465700 Sobic001G465700 Sobic005G100600--Sobic001G465700 Sobic005G100600--Sobic006G038500 Sobic005G100600--Sobic006G173600 Sobic005G100600--Sobic001G261545 Sobic005G100600--Sobic002G091600
Octagon: transcription factors


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