Gene annotation
Transcriptome id Sobic.003G386600.1
Synonym CRT3, EBS2, AtCRT3, Sb03g042500, PSL1
Functional annotation calreticulin precursor protein, putative, expressed
UniProt C5XET1
Pfam PF00262
Panther DB PTHR11073 PTHR11073:SF6
NCBI CDD KOG0674; Calreticulin
KEGG Orthology K08057; calreticulin
Gene Ontology GO:0006457; protein folding GO:0005783endoplasmic reticulum GO:0005509calcium ion binding


Orthologs (automatic annotation)
TAIR AT1G08450 : calreticulin 3
RAP-DB (Rice) LOC_Os01g67054.1 : calreticulin precursor protein, putative, expressed
MaizeGDB (Corn) Zm00025a039458
Brachypodium KQK05518 , KQK11005 , KQK11004
Barley HORVU4Hr1G059630.3 , HORVU4Hr1G059630.2 , HORVU4Hr1G059630.1 , HORVU3Hr1G089830.9 , HORVU3Hr1G089830.8 , HORVU3Hr1G089830.3 , HORVU3Hr1G089830.2 , HORVU3Hr1G089830.1 , HORVU3Hr1G089830.7 , HORVU3Hr1G089830.6 , HORVU3Hr1G089830.5 , HORVU3Hr1G089830.4 , HORVU3Hr1G089830.10
Wheat TraesCS3B02G432000 , TraesCS3A02G399000 , TraesCS3A02G399000 , TraesCS3D02G393200 , TraesCS3D02G393200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G222900 RGH1A, putative, expressed -
2 Sobic.005G188600 - -
3 Sobic.004G269000 syntaxin, putative, expressed K08488: syntaxin 7
4 Sobic.006G228500 coiled-coil domain-containing protein, putative, expressed K13115: coiled-coil domain-containing protein 130
5 Sobic.001G427300 glycosyl transferase, group 1 domain containing protein, expressed K06119: sulfoquinovosyltransferase
6 Sobic.010G005600 SEC14 cytosolic factor family protein, putative, expressed -
7 Sobic.001G035900 expressed protein K13156: U11/U12 small nuclear ribonucleoprotein 48 kDa protein
8 Sobic.001G098301 - -
9 Sobic.009G084500 ethylene-responsive protein related, putative, expressed -
10 Sobic.003G383300 RNA polymerase III RPC4 domain containing protein, expressed K03026: RPC4, DNA-directed RNA polymerase III subunit RPC4
11 Sobic.006G249050 - -
12 Sobic.008G022300 OsWAK116 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed -
13 Sobic.001G420300 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
14 Sobic.003G221800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
15 Sobic.004G088100 myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed K10781: fatty acyl-ACP thioesterase B
16 Sobic.006G079350 - -
17 Sobic.001G318432 - -
18 Sobic.010G176550 - -
19 Sobic.004G174400 ZOS2-09 - C2H2 zinc finger protein, expressed -
20 Sobic.001G191600 TMS membrane protein/tumour differentially expressed protein, putative, expressed -


Gene co-expression network
sample Sobic003G386600 Sobic003G386600 Sobic005G222900 Sobic005G222900 Sobic003G386600--Sobic005G222900 Sobic005G188600 Sobic005G188600 Sobic003G386600--Sobic005G188600 Sobic004G269000 Sobic004G269000 Sobic003G386600--Sobic004G269000 Sobic006G228500 Sobic006G228500 Sobic003G386600--Sobic006G228500 Sobic001G427300 Sobic001G427300 Sobic003G386600--Sobic001G427300 Sobic010G005600 Sobic010G005600 Sobic003G386600--Sobic010G005600 Sobic001G035900 Sobic001G035900 Sobic003G386600--Sobic001G035900 Sobic001G098301 Sobic001G098301 Sobic003G386600--Sobic001G098301 Sobic009G084500 Sobic009G084500 Sobic003G386600--Sobic009G084500 Sobic005G222900--Sobic003G386600 Sobic003G210801 Sobic003G210801 Sobic005G222900--Sobic003G210801 Sobic006G249050 Sobic006G249050 Sobic005G222900--Sobic006G249050 Sobic005G222900--Sobic005G188600 Sobic004G088100 Sobic004G088100 Sobic005G222900--Sobic004G088100 Sobic003G397200 Sobic003G397200 Sobic005G222900--Sobic003G397200 Sobic003G263001 Sobic003G263001 Sobic005G222900--Sobic003G263001 Sobic005G222900--Sobic001G098301 Sobic008G022300 Sobic008G022300 Sobic005G222900--Sobic008G022300 Sobic001G065600 Sobic001G065600 Sobic005G188600--Sobic001G065600 Sobic001G158900 Sobic001G158900 Sobic005G188600--Sobic001G158900 Sobic006G188000 Sobic006G188000 Sobic005G188600--Sobic006G188000 Sobic003G443500 Sobic003G443500 Sobic005G188600--Sobic003G443500 Sobic006G114900 Sobic006G114900 Sobic005G188600--Sobic006G114900 Sobic006G101500 Sobic006G101500 Sobic005G188600--Sobic006G101500 Sobic008G115900 Sobic008G115900 Sobic005G188600--Sobic008G115900 Sobic005G188600--Sobic001G098301 Sobic006G160400 Sobic006G160400 Sobic005G188600--Sobic006G160400 Sobic004G269000--Sobic009G084500 Sobic001G085600 Sobic001G085600 Sobic004G269000--Sobic001G085600 Sobic001G048100 Sobic001G048100 Sobic004G269000--Sobic001G048100 Sobic006G092000 Sobic006G092000 Sobic004G269000--Sobic006G092000 Sobic004G269000--Sobic003G386600 Sobic004G193700 Sobic004G193700 Sobic004G269000--Sobic004G193700 Sobic007G136800 Sobic007G136800 Sobic004G269000--Sobic007G136800 Sobic002G218500 Sobic002G218500 Sobic004G269000--Sobic002G218500 Sobic005G100600 Sobic005G100600 Sobic004G269000--Sobic005G100600 Sobic004G164400 Sobic004G164400 Sobic006G228500--Sobic004G164400 Sobic004G121100 Sobic004G121100 Sobic006G228500--Sobic004G121100 Sobic007G108500 Sobic007G108500 Sobic006G228500--Sobic007G108500 Sobic001G318432 Sobic001G318432 Sobic006G228500--Sobic001G318432 Sobic001G107500 Sobic001G107500 Sobic006G228500--Sobic001G107500 Sobic001G298600 Sobic001G298600 Sobic006G228500--Sobic001G298600 Sobic010G056200 Sobic010G056200 Sobic006G228500--Sobic010G056200 Sobic009G065100 Sobic009G065100 Sobic006G228500--Sobic009G065100 Sobic002G031400 Sobic002G031400 Sobic006G228500--Sobic002G031400 Sobic001G486300 Sobic001G486300 Sobic001G427300--Sobic001G486300 Sobic009G134500 Sobic009G134500 Sobic001G427300--Sobic009G134500 Sobic001G427300--Sobic004G164400 Sobic008G136200 Sobic008G136200 Sobic001G427300--Sobic008G136200 Sobic001G420200 Sobic001G420200 Sobic001G427300--Sobic001G420200 Sobic009G215800 Sobic009G215800 Sobic001G427300--Sobic009G215800 Sobic004G290800 Sobic004G290800 Sobic001G427300--Sobic004G290800 Sobic009G127900 Sobic009G127900 Sobic001G427300--Sobic009G127900 Sobic004G174400 Sobic004G174400 Sobic001G427300--Sobic004G174400 Sobic007G052900 Sobic007G052900 Sobic010G005600--Sobic007G052900 Sobic010G176550 Sobic010G176550 Sobic010G005600--Sobic010G176550 Sobic010G005600--Sobic002G031400 Sobic001G159400 Sobic001G159400 Sobic010G005600--Sobic001G159400 Sobic010G005600--Sobic004G174400 Sobic010G005600--Sobic009G215800 Sobic002G351900 Sobic002G351900 Sobic010G005600--Sobic002G351900 Sobic001G384900 Sobic001G384900 Sobic010G005600--Sobic001G384900 Sobic010G005600--Sobic010G056200 Sobic003G254000 Sobic003G254000 Sobic001G035900--Sobic003G254000 Sobic001G035900--Sobic002G031400 Sobic002G064750 Sobic002G064750 Sobic001G035900--Sobic002G064750 Sobic007G099100 Sobic007G099100 Sobic001G035900--Sobic007G099100 Sobic001G274200 Sobic001G274200 Sobic001G035900--Sobic001G274200 Sobic003G429650 Sobic003G429650 Sobic001G035900--Sobic003G429650 Sobic001G035900--Sobic010G176550 Sobic007G161000 Sobic007G161000 Sobic001G035900--Sobic007G161000 Sobic009G024000 Sobic009G024000 Sobic001G035900--Sobic009G024000 Sobic010G043800 Sobic010G043800 Sobic001G098301--Sobic010G043800 Sobic004G001300 Sobic004G001300 Sobic001G098301--Sobic004G001300 Sobic001G098301--Sobic005G188600 Sobic001G048400 Sobic001G048400 Sobic001G098301--Sobic001G048400 Sobic009G121000 Sobic009G121000 Sobic001G098301--Sobic009G121000 Sobic006G038500 Sobic006G038500 Sobic001G098301--Sobic006G038500 Sobic002G000600 Sobic002G000600 Sobic001G098301--Sobic002G000600 Sobic001G098301--Sobic006G101500 Sobic007G150100 Sobic007G150100 Sobic001G098301--Sobic007G150100 Sobic009G084500--Sobic004G269000 Sobic009G084500--Sobic005G100600 Sobic009G084500--Sobic007G136800 Sobic001G332500 Sobic001G332500 Sobic009G084500--Sobic001G332500 Sobic006G173600 Sobic006G173600 Sobic009G084500--Sobic006G173600 Sobic009G084500--Sobic004G174400 Sobic010G186000 Sobic010G186000 Sobic009G084500--Sobic010G186000 Sobic009G084500--Sobic006G092000 Sobic009G084500--Sobic001G048100
Octagon: transcription factors


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