Gene annotation
Transcriptome id Sobic.004G088100.1
Synonym FATB, Sb04g007290
Functional annotation myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
UniProt C5XXZ3
Pfam PF12590 PF01643
Panther DB PTHR31727 PTHR31727:SF3
NCBI CDD -
KEGG Orthology K10781; fatty acyl-ACP thioesterase B
Gene Ontology GO:0016790; thiolester hydrolase activity GO:0006633fatty acid biosynthetic process


Orthologs (automatic annotation)
TAIR AT1G08510 : fatty acyl-ACP thioesterases B
RAP-DB (Rice) LOC_Os06g05130.1 : myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU7Hr1G084830.8 , HORVU7Hr1G084830.9 , HORVU7Hr1G084830.4 , HORVU7Hr1G084830.5 , HORVU7Hr1G084830.6 , HORVU7Hr1G084830.7 , HORVU7Hr1G084830.1 , HORVU7Hr1G084830.2 , HORVU7Hr1G084830.3 , HORVU7Hr1G084830.12 , HORVU7Hr1G084830.10 , HORVU7Hr1G084830.11
Wheat TraesCS7B02G255800 , TraesCS7B02G255800 , TraesCS7A02G371900 , TraesCS7A02G371900 , TraesCS7D02G351000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G088100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G082200 TKL_IRAK_DUF26-lc22 - DUF26 kinases have homology to DUF26 containing loci, expressed -
2 Sobic.008G125600 - -
3 Sobic.003G386600 calreticulin precursor protein, putative, expressed K08057: calreticulin
4 Sobic.001G240800 tyrosine protein kinase domain containing protein, putative, expressed -
5 Sobic.005G222900 RGH1A, putative, expressed -
6 Sobic.003G264901 - -
7 Sobic.007G054100 stress-induced protein, putative, expressed -
8 Sobic.003G368800 expressed protein -
9 Sobic.001G429300 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K13414: mitogen-activated protein kinase kinase kinase 1
10 Sobic.003G221800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
11 Sobic.001G368400 glutaredoxin, putative, expressed K17479: glutaredoxin domain-containing cysteine-rich protein 1
12 Sobic.006G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
13 Sobic.010G280100 expressed protein -
14 Sobic.005G084400 la domain containing protein, expressed K15191: La-related protein 7
15 Sobic.009G008100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
16 Sobic.009G103600 MEE12, putative, expressed -
17 Sobic.009G057700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
18 Sobic.001G102300 homeobox domain containing protein, expressed -
19 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
20 Sobic.004G096100 expressed protein -


Gene co-expression network
sample Sobic004G088100 Sobic004G088100 Sobic009G082200 Sobic009G082200 Sobic004G088100--Sobic009G082200 Sobic008G125600 Sobic008G125600 Sobic004G088100--Sobic008G125600 Sobic003G386600 Sobic003G386600 Sobic004G088100--Sobic003G386600 Sobic001G240800 Sobic001G240800 Sobic004G088100--Sobic001G240800 Sobic005G222900 Sobic005G222900 Sobic004G088100--Sobic005G222900 Sobic003G264901 Sobic003G264901 Sobic004G088100--Sobic003G264901 Sobic007G054100 Sobic007G054100 Sobic004G088100--Sobic007G054100 Sobic003G368800 Sobic003G368800 Sobic004G088100--Sobic003G368800 Sobic001G429300 Sobic001G429300 Sobic004G088100--Sobic001G429300 Sobic009G082200--Sobic004G088100 Sobic002G040800 Sobic002G040800 Sobic009G082200--Sobic002G040800 Sobic009G154600 Sobic009G154600 Sobic009G082200--Sobic009G154600 Sobic005G008001 Sobic005G008001 Sobic009G082200--Sobic005G008001 Sobic009G082200--Sobic008G125600 Sobic001G377000 Sobic001G377000 Sobic009G082200--Sobic001G377000 Sobic002G273700 Sobic002G273700 Sobic009G082200--Sobic002G273700 Sobic001G031300 Sobic001G031300 Sobic009G082200--Sobic001G031300 Sobic003G222300 Sobic003G222300 Sobic009G082200--Sobic003G222300 Sobic008G125501 Sobic008G125501 Sobic008G125600--Sobic008G125501 Sobic008G000900 Sobic008G000900 Sobic008G125600--Sobic008G000900 Sobic003G159450 Sobic003G159450 Sobic008G125600--Sobic003G159450 Sobic001G111900 Sobic001G111900 Sobic008G125600--Sobic001G111900 Sobic003G088700 Sobic003G088700 Sobic008G125600--Sobic003G088700 Sobic007G112900 Sobic007G112900 Sobic008G125600--Sobic007G112900 Sobic004G062800 Sobic004G062800 Sobic008G125600--Sobic004G062800 Sobic010G056000 Sobic010G056000 Sobic008G125600--Sobic010G056000 Sobic001G454401 Sobic001G454401 Sobic008G125600--Sobic001G454401 Sobic003G386600--Sobic005G222900 Sobic005G188600 Sobic005G188600 Sobic003G386600--Sobic005G188600 Sobic004G269000 Sobic004G269000 Sobic003G386600--Sobic004G269000 Sobic006G228500 Sobic006G228500 Sobic003G386600--Sobic006G228500 Sobic001G427300 Sobic001G427300 Sobic003G386600--Sobic001G427300 Sobic010G005600 Sobic010G005600 Sobic003G386600--Sobic010G005600 Sobic001G035900 Sobic001G035900 Sobic003G386600--Sobic001G035900 Sobic001G098301 Sobic001G098301 Sobic003G386600--Sobic001G098301 Sobic009G084500 Sobic009G084500 Sobic003G386600--Sobic009G084500 Sobic004G096100 Sobic004G096100 Sobic001G240800--Sobic004G096100 Sobic010G241300 Sobic010G241300 Sobic001G240800--Sobic010G241300 Sobic005G072200 Sobic005G072200 Sobic001G240800--Sobic005G072200 Sobic001G291200 Sobic001G291200 Sobic001G240800--Sobic001G291200 Sobic004G227300 Sobic004G227300 Sobic001G240800--Sobic004G227300 Sobic001G240800--Sobic004G088100 Sobic007G179750 Sobic007G179750 Sobic001G240800--Sobic007G179750 Sobic006G102400 Sobic006G102400 Sobic001G240800--Sobic006G102400 Sobic001G240800--Sobic003G264901 Sobic005G222900--Sobic003G386600 Sobic003G210801 Sobic003G210801 Sobic005G222900--Sobic003G210801 Sobic006G249050 Sobic006G249050 Sobic005G222900--Sobic006G249050 Sobic005G222900--Sobic005G188600 Sobic005G222900--Sobic004G088100 Sobic003G397200 Sobic003G397200 Sobic005G222900--Sobic003G397200 Sobic003G263001 Sobic003G263001 Sobic005G222900--Sobic003G263001 Sobic005G222900--Sobic001G098301 Sobic008G022300 Sobic008G022300 Sobic005G222900--Sobic008G022300 Sobic004G096300 Sobic004G096300 Sobic003G264901--Sobic004G096300 Sobic010G172200 Sobic010G172200 Sobic003G264901--Sobic010G172200 Sobic001G293800 Sobic001G293800 Sobic003G264901--Sobic001G293800 Sobic006G053700 Sobic006G053700 Sobic003G264901--Sobic006G053700 Sobic007G071000 Sobic007G071000 Sobic003G264901--Sobic007G071000 Sobic003G264901--Sobic001G377000 Sobic009G205600 Sobic009G205600 Sobic003G264901--Sobic009G205600 Sobic003G153800 Sobic003G153800 Sobic003G264901--Sobic003G153800 Sobic001G053900 Sobic001G053900 Sobic003G264901--Sobic001G053900 Sobic003G308700 Sobic003G308700 Sobic007G054100--Sobic003G308700 Sobic006G042200 Sobic006G042200 Sobic007G054100--Sobic006G042200 Sobic007G054100--Sobic002G273700 Sobic002G073900 Sobic002G073900 Sobic007G054100--Sobic002G073900 Sobic007G054100--Sobic003G153800 Sobic002G174900 Sobic002G174900 Sobic007G054100--Sobic002G174900 Sobic002G187801 Sobic002G187801 Sobic007G054100--Sobic002G187801 Sobic007G054100--Sobic004G096300 Sobic005G090600 Sobic005G090600 Sobic007G054100--Sobic005G090600 Sobic001G144600 Sobic001G144600 Sobic003G368800--Sobic001G144600 Sobic003G368800--Sobic002G174900 Sobic005G025300 Sobic005G025300 Sobic003G368800--Sobic005G025300 Sobic003G368800--Sobic002G040800 Sobic004G147200 Sobic004G147200 Sobic003G368800--Sobic004G147200 Sobic002G227200 Sobic002G227200 Sobic003G368800--Sobic002G227200 Sobic003G368800--Sobic004G227300 Sobic001G276200 Sobic001G276200 Sobic003G368800--Sobic001G276200 Sobic003G368800--Sobic001G429300 Sobic010G268300 Sobic010G268300 Sobic001G429300--Sobic010G268300 Sobic010G280100 Sobic010G280100 Sobic001G429300--Sobic010G280100 Sobic006G273200 Sobic006G273200 Sobic001G429300--Sobic006G273200 Sobic002G122600 Sobic002G122600 Sobic001G429300--Sobic002G122600 Sobic004G083700 Sobic004G083700 Sobic001G429300--Sobic004G083700 Sobic008G165700 Sobic008G165700 Sobic001G429300--Sobic008G165700 Sobic003G018900 Sobic003G018900 Sobic001G429300--Sobic003G018900 Sobic006G171700 Sobic006G171700 Sobic001G429300--Sobic006G171700 Sobic001G281600 Sobic001G281600 Sobic001G429300--Sobic001G281600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.