Gene annotation
Transcriptome id Sobic.005G084400.1
Synonym Sb05g006890
Functional annotation la domain containing protein, expressed
UniProt C5Y7R2
Pfam PF07145 PF05383
Panther DB PTHR22792 PTHR22792:SF60
NCBI CDD KOG1855; Predicted RNA-binding protein
KEGG Orthology K15191; La-related protein 7
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G43970 : RNA-binding protein
RAP-DB (Rice) LOC_Os11g14300.1 : la domain containing protein, expressed
MaizeGDB (Corn) Zm00025a054477 , Zm00025a015596
Brachypodium KQJ88746
Barley HORVU5Hr1G029110.1 , HORVU4Hr1G014800.3 , HORVU4Hr1G014800.2 , HORVU4Hr1G014800.1
Wheat TraesCS4B02G087000 , TraesCS4D02G084200 , TraesCS4A02G229400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G084400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G144950 - -
2 Sobic.004G246900 ankyrin repeat-containing protein, putative, expressed -
3 Sobic.010G143200 - -
4 Sobic.005G110475 - -
5 Sobic.009G103600 MEE12, putative, expressed -
6 Sobic.001G107900 fip1 motif family protein, expressed -
7 Sobic.002G313400 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12815: DHX38, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16
8 Sobic.008G165700 expressed protein -
9 Sobic.001G261900 caffeine-induced death protein 1, putative, expressed -
10 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
11 Sobic.001G429300 STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K13414: mitogen-activated protein kinase kinase kinase 1
12 Sobic.005G128400 NLI interacting factor-like phosphatase, putative, expressed K18999: RNA polymerase II C-terminal domain phosphatase-like 3/4
13 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
14 Sobic.001G222250 - -
15 Sobic.004G147200 - -
16 Sobic.010G268300 protein phosphatase 2C, putative, expressed -
17 Sobic.006G273200 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@protein kinase family protein, putative, expressed K14500: BR-signaling kinase
18 Sobic.001G544500 expressed protein -
19 Sobic.003G109700 expressed protein -
20 Sobic.004G264300 nuclear matrix constituent protein 1-like, putative, expressed -


Gene co-expression network
sample Sobic005G084400 Sobic005G084400 Sobic003G144950 Sobic003G144950 Sobic005G084400--Sobic003G144950 Sobic004G246900 Sobic004G246900 Sobic005G084400--Sobic004G246900 Sobic010G143200 Sobic010G143200 Sobic005G084400--Sobic010G143200 Sobic005G110475 Sobic005G110475 Sobic005G084400--Sobic005G110475 Sobic009G103600 Sobic009G103600 Sobic005G084400--Sobic009G103600 Sobic001G107900 Sobic001G107900 Sobic005G084400--Sobic001G107900 Sobic002G313400 Sobic002G313400 Sobic005G084400--Sobic002G313400 Sobic008G165700 Sobic008G165700 Sobic005G084400--Sobic008G165700 Sobic001G261900 Sobic001G261900 Sobic005G084400--Sobic001G261900 Sobic002G336800 Sobic002G336800 Sobic003G144950--Sobic002G336800 Sobic002G031400 Sobic002G031400 Sobic003G144950--Sobic002G031400 Sobic004G174400 Sobic004G174400 Sobic003G144950--Sobic004G174400 Sobic003G144950--Sobic005G110475 Sobic003G144950--Sobic009G103600 Sobic003G144950--Sobic005G084400 Sobic001G124000 Sobic001G124000 Sobic003G144950--Sobic001G124000 Sobic010G143800 Sobic010G143800 Sobic003G144950--Sobic010G143800 Sobic008G011100 Sobic008G011100 Sobic003G144950--Sobic008G011100 Sobic010G078900 Sobic010G078900 Sobic004G246900--Sobic010G078900 Sobic001G102700 Sobic001G102700 Sobic004G246900--Sobic001G102700 Sobic002G134600 Sobic002G134600 Sobic004G246900--Sobic002G134600 Sobic001G226700 Sobic001G226700 Sobic004G246900--Sobic001G226700 Sobic010G079900 Sobic010G079900 Sobic004G246900--Sobic010G079900 Sobic001G088100 Sobic001G088100 Sobic004G246900--Sobic001G088100 Sobic002G294800 Sobic002G294800 Sobic004G246900--Sobic002G294800 Sobic010G021500 Sobic010G021500 Sobic004G246900--Sobic010G021500 Sobic004G246900--Sobic005G084400 Sobic007G112900 Sobic007G112900 Sobic010G143200--Sobic007G112900 Sobic003G159450 Sobic003G159450 Sobic010G143200--Sobic003G159450 Sobic001G261496 Sobic001G261496 Sobic010G143200--Sobic001G261496 Sobic001G191100 Sobic001G191100 Sobic010G143200--Sobic001G191100 Sobic008G000900 Sobic008G000900 Sobic010G143200--Sobic008G000900 Sobic004G096500 Sobic004G096500 Sobic010G143200--Sobic004G096500 Sobic008G125600 Sobic008G125600 Sobic010G143200--Sobic008G125600 Sobic008G091671 Sobic008G091671 Sobic010G143200--Sobic008G091671 Sobic009G178800 Sobic009G178800 Sobic010G143200--Sobic009G178800 Sobic005G110475--Sobic002G336800 Sobic005G110475--Sobic008G125600 Sobic005G110475--Sobic003G144950 Sobic005G110475--Sobic009G103600 Sobic009G085400 Sobic009G085400 Sobic005G110475--Sobic009G085400 Sobic005G110475--Sobic008G011100 Sobic006G263000 Sobic006G263000 Sobic005G110475--Sobic006G263000 Sobic002G144966 Sobic002G144966 Sobic005G110475--Sobic002G144966 Sobic001G081200 Sobic001G081200 Sobic005G110475--Sobic001G081200 Sobic009G214200 Sobic009G214200 Sobic009G103600--Sobic009G214200 Sobic003G109700 Sobic003G109700 Sobic009G103600--Sobic003G109700 Sobic006G032900 Sobic006G032900 Sobic009G103600--Sobic006G032900 Sobic009G103600--Sobic002G336800 Sobic009G103600--Sobic005G110475 Sobic009G103600--Sobic003G144950 Sobic004G019500 Sobic004G019500 Sobic009G103600--Sobic004G019500 Sobic003G324100 Sobic003G324100 Sobic009G103600--Sobic003G324100 Sobic009G215800 Sobic009G215800 Sobic009G103600--Sobic009G215800 Sobic001G542700 Sobic001G542700 Sobic001G107900--Sobic001G542700 Sobic004G216500 Sobic004G216500 Sobic001G107900--Sobic004G216500 Sobic009G138800 Sobic009G138800 Sobic001G107900--Sobic009G138800 Sobic004G065100 Sobic004G065100 Sobic001G107900--Sobic004G065100 Sobic008G192600 Sobic008G192600 Sobic001G107900--Sobic008G192600 Sobic001G014100 Sobic001G014100 Sobic001G107900--Sobic001G014100 Sobic001G241200 Sobic001G241200 Sobic001G107900--Sobic001G241200 Sobic007G117400 Sobic007G117400 Sobic001G107900--Sobic007G117400 Sobic002G277600 Sobic002G277600 Sobic001G107900--Sobic002G277600 Sobic001G219600 Sobic001G219600 Sobic002G313400--Sobic001G219600 Sobic009G260500 Sobic009G260500 Sobic002G313400--Sobic009G260500 Sobic002G309600 Sobic002G309600 Sobic002G313400--Sobic002G309600 Sobic002G313400--Sobic008G011100 Sobic001G002000 Sobic001G002000 Sobic002G313400--Sobic001G002000 Sobic002G313400--Sobic007G117400 Sobic001G111600 Sobic001G111600 Sobic002G313400--Sobic001G111600 Sobic008G047800 Sobic008G047800 Sobic002G313400--Sobic008G047800 Sobic001G493200 Sobic001G493200 Sobic002G313400--Sobic001G493200 Sobic006G273200 Sobic006G273200 Sobic008G165700--Sobic006G273200 Sobic009G233300 Sobic009G233300 Sobic008G165700--Sobic009G233300 Sobic010G268300 Sobic010G268300 Sobic008G165700--Sobic010G268300 Sobic002G187801 Sobic002G187801 Sobic008G165700--Sobic002G187801 Sobic002G365100 Sobic002G365100 Sobic008G165700--Sobic002G365100 Sobic008G165700--Sobic001G191100 Sobic003G123000 Sobic003G123000 Sobic008G165700--Sobic003G123000 Sobic003G018900 Sobic003G018900 Sobic008G165700--Sobic003G018900 Sobic003G000150 Sobic003G000150 Sobic008G165700--Sobic003G000150 Sobic010G100800 Sobic010G100800 Sobic001G261900--Sobic010G100800 Sobic007G212300 Sobic007G212300 Sobic001G261900--Sobic007G212300 Sobic004G107200 Sobic004G107200 Sobic001G261900--Sobic004G107200 Sobic004G176000 Sobic004G176000 Sobic001G261900--Sobic004G176000 Sobic006G119400 Sobic006G119400 Sobic001G261900--Sobic006G119400 Sobic008G132900 Sobic008G132900 Sobic001G261900--Sobic008G132900 Sobic004G351800 Sobic004G351800 Sobic001G261900--Sobic004G351800 Sobic007G000300 Sobic007G000300 Sobic001G261900--Sobic007G000300 Sobic007G065100 Sobic007G065100 Sobic001G261900--Sobic007G065100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.