Gene annotation
Transcriptome id Sobic.002G313400.1
Synonym EMB3011, Sb02g034295
Functional annotation pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
UniProt A0A1B6QEE4
Pfam PF00270 PF00271 PF07717 PF04408
Panther DB PTHR18934 PTHR18934:SF91
NCBI CDD -
KEGG Orthology K12815; DHX38, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding GO:0004386helicase activity


Orthologs (automatic annotation)
TAIR AT5G13010 : RNA helicase family protein
RAP-DB (Rice) LOC_Os07g32430.1 : pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative, expressed
MaizeGDB (Corn) Zm00025a014750
Brachypodium KQK14830 , KQK16078 , PNT65858
Barley HORVU2Hr1G047870.5 , HORVU2Hr1G047870.8 , HORVU2Hr1G047870.9 , HORVU2Hr1G047870.4 , HORVU2Hr1G047870.6 , HORVU2Hr1G047870.7 , HORVU2Hr1G047870.1 , HORVU2Hr1G047870.2 , HORVU2Hr1G047870.3 , HORVU2Hr1G047870.10 , HORVU2Hr1G047870.11
Wheat TraesCS2D02G231900 , TraesCS2A02G233700 , TraesCS2B02G249700
Populus PNT17068 , PNT17066 , PNT17067


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
2 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
3 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
4 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
5 Sobic.001G002000 protein kinase domain containing protein, expressed -
6 Sobic.007G117400 expressed protein -
7 Sobic.001G111600 expressed protein -
8 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
9 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
10 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
11 Sobic.008G103200 OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed K01322: prolyl oligopeptidase
12 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
13 Sobic.003G141500 CGMC_GSK.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
14 Sobic.002G391600 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K12854: SNRNP200, pre-mRNA-splicing helicase BRR2
15 Sobic.010G028800 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
16 Sobic.001G102700 metalloendopeptidase/ metallopeptidase/ zinc ion binding protein, putative, expressed K01404: leishmanolysin
17 Sobic.001G407200 SacI homology domain containing protein, expressed -
18 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
19 Sobic.009G050900 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed K10532: heparan-alpha-glucosaminide N-acetyltransferase
20 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1


Gene co-expression network
sample Sobic002G313400 Sobic002G313400 Sobic001G219600 Sobic001G219600 Sobic002G313400--Sobic001G219600 Sobic009G260500 Sobic009G260500 Sobic002G313400--Sobic009G260500 Sobic002G309600 Sobic002G309600 Sobic002G313400--Sobic002G309600 Sobic008G011100 Sobic008G011100 Sobic002G313400--Sobic008G011100 Sobic001G002000 Sobic001G002000 Sobic002G313400--Sobic001G002000 Sobic007G117400 Sobic007G117400 Sobic002G313400--Sobic007G117400 Sobic001G111600 Sobic001G111600 Sobic002G313400--Sobic001G111600 Sobic008G047800 Sobic008G047800 Sobic002G313400--Sobic008G047800 Sobic001G493200 Sobic001G493200 Sobic002G313400--Sobic001G493200 Sobic001G219600--Sobic009G260500 Sobic001G219600--Sobic002G309600 Sobic002G317200 Sobic002G317200 Sobic001G219600--Sobic002G317200 Sobic009G047200 Sobic009G047200 Sobic001G219600--Sobic009G047200 Sobic003G141500 Sobic003G141500 Sobic001G219600--Sobic003G141500 Sobic010G139000 Sobic010G139000 Sobic001G219600--Sobic010G139000 Sobic001G071400 Sobic001G071400 Sobic001G219600--Sobic001G071400 Sobic002G397500 Sobic002G397500 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000 Sobic009G260500--Sobic001G219600 Sobic004G009600 Sobic004G009600 Sobic009G260500--Sobic004G009600 Sobic010G277500 Sobic010G277500 Sobic009G260500--Sobic010G277500 Sobic008G009700 Sobic008G009700 Sobic009G260500--Sobic008G009700 Sobic009G260500--Sobic010G139000 Sobic008G028700 Sobic008G028700 Sobic009G260500--Sobic008G028700 Sobic009G040600 Sobic009G040600 Sobic009G260500--Sobic009G040600 Sobic009G260500--Sobic002G309600 Sobic001G311500 Sobic001G311500 Sobic009G260500--Sobic001G311500 Sobic003G280800 Sobic003G280800 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic002G309600--Sobic007G117400 Sobic002G309600--Sobic008G009700 Sobic002G309600--Sobic001G071400 Sobic005G112300 Sobic005G112300 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G006900 Sobic002G006900 Sobic002G309600--Sobic002G006900 Sobic008G011100--Sobic001G219600 Sobic004G039200 Sobic004G039200 Sobic008G011100--Sobic004G039200 Sobic004G087600 Sobic004G087600 Sobic008G011100--Sobic004G087600 Sobic002G031400 Sobic002G031400 Sobic008G011100--Sobic002G031400 Sobic008G011100--Sobic009G260500 Sobic004G018300 Sobic004G018300 Sobic008G011100--Sobic004G018300 Sobic001G167200 Sobic001G167200 Sobic008G011100--Sobic001G167200 Sobic009G065100 Sobic009G065100 Sobic008G011100--Sobic009G065100 Sobic008G011100--Sobic001G311500 Sobic001G194200 Sobic001G194200 Sobic001G002000--Sobic001G194200 Sobic001G289800 Sobic001G289800 Sobic001G002000--Sobic001G289800 Sobic004G291900 Sobic004G291900 Sobic001G002000--Sobic004G291900 Sobic003G422500 Sobic003G422500 Sobic001G002000--Sobic003G422500 Sobic010G247800 Sobic010G247800 Sobic001G002000--Sobic010G247800 Sobic010G010700 Sobic010G010700 Sobic001G002000--Sobic010G010700 Sobic004G034900 Sobic004G034900 Sobic001G002000--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic001G002000--Sobic001G289600 Sobic002G411600 Sobic002G411600 Sobic001G002000--Sobic002G411600 Sobic007G117400--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic007G117400--Sobic001G241200 Sobic007G117400--Sobic004G065100 Sobic007G161000 Sobic007G161000 Sobic007G117400--Sobic007G161000 Sobic007G117400--Sobic003G280800 Sobic007G117400--Sobic004G009600 Sobic007G117400--Sobic001G154900 Sobic007G117400--Sobic009G040600 Sobic005G008800 Sobic005G008800 Sobic007G117400--Sobic005G008800 Sobic002G068100 Sobic002G068100 Sobic001G111600--Sobic002G068100 Sobic003G293200 Sobic003G293200 Sobic001G111600--Sobic003G293200 Sobic005G128400 Sobic005G128400 Sobic001G111600--Sobic005G128400 Sobic001G354600 Sobic001G354600 Sobic001G111600--Sobic001G354600 Sobic001G457900 Sobic001G457900 Sobic001G111600--Sobic001G457900 Sobic010G112100 Sobic010G112100 Sobic001G111600--Sobic010G112100 Sobic010G275500 Sobic010G275500 Sobic001G111600--Sobic010G275500 Sobic005G220000 Sobic005G220000 Sobic001G111600--Sobic005G220000 Sobic002G362800 Sobic002G362800 Sobic001G111600--Sobic002G362800 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic008G047800--Sobic002G309600 Sobic009G084900 Sobic009G084900 Sobic001G493200--Sobic009G084900 Sobic003G266001 Sobic003G266001 Sobic001G493200--Sobic003G266001 Sobic010G059500 Sobic010G059500 Sobic001G493200--Sobic010G059500 Sobic001G433800 Sobic001G433800 Sobic001G493200--Sobic001G433800 Sobic004G072100 Sobic004G072100 Sobic001G493200--Sobic004G072100 Sobic004G096400 Sobic004G096400 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic006G077200 Sobic006G077200 Sobic001G493200--Sobic006G077200 Sobic003G408600 Sobic003G408600 Sobic001G493200--Sobic003G408600
Octagon: transcription factors


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