Gene annotation
Transcriptome id Sobic.008G011100.3,Sobic.008G011100.4
Synonym
Functional annotation OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed
UniProt A0A1Z5R4C1 , A0A1Z5R4C4
Pfam PF04096
Panther DB PTHR23198 PTHR23198:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006810; transport GO:0005643nuclear pore


Orthologs (automatic annotation)
TAIR AT1G10390 : Nucleoporin autopeptidase
RAP-DB (Rice) LOC_Os12g06890.1 : OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed
MaizeGDB (Corn) Zm00025a028897 , Zm00025a015331
Brachypodium KQJ89587 , KQK03627 , KQJ89624
Barley HORVU3Hr1G000700.4 , HORVU3Hr1G034780.1 , HORVU3Hr1G034780.3 , HORVU3Hr1G034780.2 , HORVU3Hr1G034780.5 , HORVU3Hr1G034780.4 , HORVU3Hr1G034780.7 , HORVU3Hr1G034780.6 , HORVU3Hr1G034780.9 , HORVU3Hr1G034780.8
Wheat TraesCS4B02G137800 , TraesCS4B02G137800 , TraesCS4B02G137800 , TraesCS3D02G178700 , TraesCS3A02G172200 , TraesCS3D02G178700 , TraesCS3D02G178700 , TraesCS3D02G178700 , TraesCS4A02G177800 , TraesCS4A02G177800 , TraesCS4A02G177800 , TraesCS4A02G177800 , TraesCS4A02G177800 , TraesCS4D02G132600 , TraesCS4D02G132600 , TraesCS4D02G132600 , TraesCS4D02G132600 , TraesCS4D02G132600 , TraesCS3A02G172200 , TraesCS3A02G172200 , TraesCS3A02G172200
Populus -


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cDNA sequences
Sobic.008G011100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
2 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
3 Sobic.004G087600 RNA recognition motif containing protein, putative, expressed -
4 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
5 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
6 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
7 Sobic.001G167200 DNA-directed polymerase, putative, expressed K03511: DNA polymerase kappa
8 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
9 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
10 Sobic.002G313400 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12815: DHX38, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16
11 Sobic.010G136600 - -
12 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
13 Sobic.005G191900 transporter family protein, putative, expressed -
14 Sobic.002G396000 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1
15 Sobic.006G052300 dnaJ domain containing protein, expressed -
16 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin
17 Sobic.009G050900 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed K10532: heparan-alpha-glucosaminide N-acetyltransferase
18 Sobic.004G096500 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
19 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
20 Sobic.007G157000 protein transport protein, putative, expressed K14006: protein transport protein SEC23


Gene co-expression network
sample Sobic008G011100 Sobic008G011100 Sobic001G219600 Sobic001G219600 Sobic008G011100--Sobic001G219600 Sobic004G039200 Sobic004G039200 Sobic008G011100--Sobic004G039200 Sobic004G087600 Sobic004G087600 Sobic008G011100--Sobic004G087600 Sobic002G031400 Sobic002G031400 Sobic008G011100--Sobic002G031400 Sobic009G260500 Sobic009G260500 Sobic008G011100--Sobic009G260500 Sobic004G018300 Sobic004G018300 Sobic008G011100--Sobic004G018300 Sobic001G167200 Sobic001G167200 Sobic008G011100--Sobic001G167200 Sobic009G065100 Sobic009G065100 Sobic008G011100--Sobic009G065100 Sobic001G311500 Sobic001G311500 Sobic008G011100--Sobic001G311500 Sobic001G219600--Sobic009G260500 Sobic002G309600 Sobic002G309600 Sobic001G219600--Sobic002G309600 Sobic002G317200 Sobic002G317200 Sobic001G219600--Sobic002G317200 Sobic009G047200 Sobic009G047200 Sobic001G219600--Sobic009G047200 Sobic003G141500 Sobic003G141500 Sobic001G219600--Sobic003G141500 Sobic010G139000 Sobic010G139000 Sobic001G219600--Sobic010G139000 Sobic001G071400 Sobic001G071400 Sobic001G219600--Sobic001G071400 Sobic002G397500 Sobic002G397500 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000 Sobic009G024000 Sobic009G024000 Sobic004G039200--Sobic009G024000 Sobic003G101500 Sobic003G101500 Sobic004G039200--Sobic003G101500 Sobic007G161000 Sobic007G161000 Sobic004G039200--Sobic007G161000 Sobic007G065400 Sobic007G065400 Sobic004G039200--Sobic007G065400 Sobic008G113100 Sobic008G113100 Sobic004G039200--Sobic008G113100 Sobic008G028700 Sobic008G028700 Sobic004G039200--Sobic008G028700 Sobic008G009700 Sobic008G009700 Sobic004G039200--Sobic008G009700 Sobic007G117400 Sobic007G117400 Sobic004G039200--Sobic007G117400 Sobic007G054400 Sobic007G054400 Sobic004G039200--Sobic007G054400 Sobic004G087600--Sobic008G011100 Sobic004G087600--Sobic004G018300 Sobic005G106500 Sobic005G106500 Sobic004G087600--Sobic005G106500 Sobic004G087600--Sobic002G031400 Sobic002G309800 Sobic002G309800 Sobic004G087600--Sobic002G309800 Sobic003G133900 Sobic003G133900 Sobic004G087600--Sobic003G133900 Sobic001G281600 Sobic001G281600 Sobic004G087600--Sobic001G281600 Sobic001G124000 Sobic001G124000 Sobic004G087600--Sobic001G124000 Sobic001G360900 Sobic001G360900 Sobic004G087600--Sobic001G360900 Sobic010G277500 Sobic010G277500 Sobic002G031400--Sobic010G277500 Sobic002G031400--Sobic007G161000 Sobic001G035900 Sobic001G035900 Sobic002G031400--Sobic001G035900 Sobic003G254000 Sobic003G254000 Sobic002G031400--Sobic003G254000 Sobic002G031400--Sobic008G011100 Sobic010G176550 Sobic010G176550 Sobic002G031400--Sobic010G176550 Sobic003G280800 Sobic003G280800 Sobic002G031400--Sobic003G280800 Sobic002G031400--Sobic009G260500 Sobic004G258700 Sobic004G258700 Sobic002G031400--Sobic004G258700 Sobic009G260500--Sobic001G219600 Sobic004G009600 Sobic004G009600 Sobic009G260500--Sobic004G009600 Sobic009G260500--Sobic010G277500 Sobic009G260500--Sobic008G009700 Sobic009G260500--Sobic010G139000 Sobic009G260500--Sobic008G028700 Sobic009G040600 Sobic009G040600 Sobic009G260500--Sobic009G040600 Sobic009G260500--Sobic002G309600 Sobic009G260500--Sobic001G311500 Sobic004G018300--Sobic004G087600 Sobic004G018300--Sobic001G167200 Sobic004G018300--Sobic008G011100 Sobic002G158700 Sobic002G158700 Sobic004G018300--Sobic002G158700 Sobic002G396000 Sobic002G396000 Sobic004G018300--Sobic002G396000 Sobic001G081000 Sobic001G081000 Sobic004G018300--Sobic001G081000 Sobic008G083000 Sobic008G083000 Sobic004G018300--Sobic008G083000 Sobic009G126400 Sobic009G126400 Sobic004G018300--Sobic009G126400 Sobic004G223600 Sobic004G223600 Sobic004G018300--Sobic004G223600 Sobic001G167200--Sobic002G158700 Sobic009G210500 Sobic009G210500 Sobic001G167200--Sobic009G210500 Sobic001G167200--Sobic004G018300 Sobic005G015900 Sobic005G015900 Sobic001G167200--Sobic005G015900 Sobic001G167200--Sobic008G011100 Sobic001G090400 Sobic001G090400 Sobic001G167200--Sobic001G090400 Sobic001G167200--Sobic001G219600 Sobic010G136600 Sobic010G136600 Sobic001G167200--Sobic010G136600 Sobic010G065300 Sobic010G065300 Sobic001G167200--Sobic010G065300 Sobic002G320500 Sobic002G320500 Sobic009G065100--Sobic002G320500 Sobic002G157000 Sobic002G157000 Sobic009G065100--Sobic002G157000 Sobic008G173900 Sobic008G173900 Sobic009G065100--Sobic008G173900 Sobic009G215800 Sobic009G215800 Sobic009G065100--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic009G065100--Sobic004G084300 Sobic002G144933 Sobic002G144933 Sobic009G065100--Sobic002G144933 Sobic009G065100--Sobic002G309800 Sobic001G107500 Sobic001G107500 Sobic009G065100--Sobic001G107500 Sobic003G197800 Sobic003G197800 Sobic009G065100--Sobic003G197800 Sobic001G311500--Sobic010G139000 Sobic009G247400 Sobic009G247400 Sobic001G311500--Sobic009G247400 Sobic005G112300 Sobic005G112300 Sobic001G311500--Sobic005G112300 Sobic003G059750 Sobic003G059750 Sobic001G311500--Sobic003G059750 Sobic001G311500--Sobic008G009700 Sobic004G314000 Sobic004G314000 Sobic001G311500--Sobic004G314000 Sobic010G279450 Sobic010G279450 Sobic001G311500--Sobic010G279450 Sobic001G311500--Sobic008G028700 Sobic001G363500 Sobic001G363500 Sobic001G311500--Sobic001G363500
Octagon: transcription factors


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