Gene annotation
Transcriptome id Sobic.002G031400.1,Sobic.002G031400.2,Sobic.002G031400.3
Synonym
Functional annotation OsFBL39 - F-box domain and LRR containing protein, expressed
UniProt A0A1B6Q8Y8 , A0A1B6Q8Y0 , A0A1B6Q8Y4
Pfam -
Panther DB PTHR32212 PTHR32212 PTHR32212:SF74
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G13570 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os07g26000.1 : OsFBX235 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.002G031400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G277500 expressed protein -
2 Sobic.007G161000 RecF/RecN/SMC N terminal domain containing protein, expressed K06636: structural maintenance of chromosome 1
3 Sobic.001G035900 expressed protein K13156: U11/U12 small nuclear ribonucleoprotein 48 kDa protein
4 Sobic.003G254000 PPR repeat domain containing protein, putative, expressed -
5 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
6 Sobic.010G176550 - -
7 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
8 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
9 Sobic.004G258700 PHD-finger family protein, expressed -
10 Sobic.008G162900 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
11 Sobic.006G182900 expressed protein -
12 Sobic.007G099100 - -
13 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
14 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
15 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
16 Sobic.010G136600 - -
17 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
18 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
19 Sobic.001G318432 - -
20 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B


Gene co-expression network
sample Sobic002G031400 Sobic002G031400 Sobic010G277500 Sobic010G277500 Sobic002G031400--Sobic010G277500 Sobic007G161000 Sobic007G161000 Sobic002G031400--Sobic007G161000 Sobic001G035900 Sobic001G035900 Sobic002G031400--Sobic001G035900 Sobic003G254000 Sobic003G254000 Sobic002G031400--Sobic003G254000 Sobic008G011100 Sobic008G011100 Sobic002G031400--Sobic008G011100 Sobic010G176550 Sobic010G176550 Sobic002G031400--Sobic010G176550 Sobic003G280800 Sobic003G280800 Sobic002G031400--Sobic003G280800 Sobic009G260500 Sobic009G260500 Sobic002G031400--Sobic009G260500 Sobic004G258700 Sobic004G258700 Sobic002G031400--Sobic004G258700 Sobic004G208900 Sobic004G208900 Sobic010G277500--Sobic004G208900 Sobic006G209850 Sobic006G209850 Sobic010G277500--Sobic006G209850 Sobic007G065400 Sobic007G065400 Sobic010G277500--Sobic007G065400 Sobic010G277500--Sobic009G260500 Sobic010G277500--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic010G277500--Sobic004G009600 Sobic008G028700 Sobic008G028700 Sobic010G277500--Sobic008G028700 Sobic010G277500--Sobic004G258700 Sobic006G216800 Sobic006G216800 Sobic010G277500--Sobic006G216800 Sobic004G039200 Sobic004G039200 Sobic007G161000--Sobic004G039200 Sobic007G117400 Sobic007G117400 Sobic007G161000--Sobic007G117400 Sobic009G024000 Sobic009G024000 Sobic007G161000--Sobic009G024000 Sobic010G139000 Sobic010G139000 Sobic007G161000--Sobic010G139000 Sobic006G182900 Sobic006G182900 Sobic007G161000--Sobic006G182900 Sobic002G309600 Sobic002G309600 Sobic007G161000--Sobic002G309600 Sobic004G314000 Sobic004G314000 Sobic007G161000--Sobic004G314000 Sobic002G134200 Sobic002G134200 Sobic007G161000--Sobic002G134200 Sobic007G161000--Sobic008G028700 Sobic001G035900--Sobic003G254000 Sobic001G035900--Sobic002G031400 Sobic002G064750 Sobic002G064750 Sobic001G035900--Sobic002G064750 Sobic007G099100 Sobic007G099100 Sobic001G035900--Sobic007G099100 Sobic001G274200 Sobic001G274200 Sobic001G035900--Sobic001G274200 Sobic003G429650 Sobic003G429650 Sobic001G035900--Sobic003G429650 Sobic001G035900--Sobic010G176550 Sobic001G035900--Sobic007G161000 Sobic001G035900--Sobic009G024000 Sobic003G254000--Sobic001G035900 Sobic001G261573 Sobic001G261573 Sobic003G254000--Sobic001G261573 Sobic004G035000 Sobic004G035000 Sobic003G254000--Sobic004G035000 Sobic003G254000--Sobic002G031400 Sobic005G039500 Sobic005G039500 Sobic003G254000--Sobic005G039500 Sobic003G254000--Sobic002G064750 Sobic003G254000--Sobic001G274200 Sobic003G254000--Sobic007G099100 Sobic003G254000--Sobic003G429650 Sobic001G219600 Sobic001G219600 Sobic008G011100--Sobic001G219600 Sobic008G011100--Sobic004G039200 Sobic004G087600 Sobic004G087600 Sobic008G011100--Sobic004G087600 Sobic008G011100--Sobic002G031400 Sobic008G011100--Sobic009G260500 Sobic004G018300 Sobic004G018300 Sobic008G011100--Sobic004G018300 Sobic001G167200 Sobic001G167200 Sobic008G011100--Sobic001G167200 Sobic009G065100 Sobic009G065100 Sobic008G011100--Sobic009G065100 Sobic001G311500 Sobic001G311500 Sobic008G011100--Sobic001G311500 Sobic010G176550--Sobic002G031400 Sobic004G034800 Sobic004G034800 Sobic010G176550--Sobic004G034800 Sobic010G176550--Sobic001G261573 Sobic003G217700 Sobic003G217700 Sobic010G176550--Sobic003G217700 Sobic007G185700 Sobic007G185700 Sobic010G176550--Sobic007G185700 Sobic010G176550--Sobic001G035900 Sobic003G234900 Sobic003G234900 Sobic010G176550--Sobic003G234900 Sobic010G005600 Sobic010G005600 Sobic010G176550--Sobic010G005600 Sobic010G032900 Sobic010G032900 Sobic010G176550--Sobic010G032900 Sobic003G280800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic003G280800--Sobic001G071400 Sobic003G280800--Sobic002G134200 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic003G280800--Sobic007G117400 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic009G260500--Sobic001G219600 Sobic009G260500--Sobic004G009600 Sobic009G260500--Sobic010G277500 Sobic008G009700 Sobic008G009700 Sobic009G260500--Sobic008G009700 Sobic009G260500--Sobic010G139000 Sobic009G260500--Sobic008G028700 Sobic009G040600 Sobic009G040600 Sobic009G260500--Sobic009G040600 Sobic009G260500--Sobic002G309600 Sobic009G260500--Sobic001G311500 Sobic008G113100 Sobic008G113100 Sobic004G258700--Sobic008G113100 Sobic004G258700--Sobic008G028700 Sobic001G456900 Sobic001G456900 Sobic004G258700--Sobic001G456900 Sobic003G148000 Sobic003G148000 Sobic004G258700--Sobic003G148000 Sobic003G101500 Sobic003G101500 Sobic004G258700--Sobic003G101500 Sobic004G258700--Sobic010G277500 Sobic004G258700--Sobic007G065400 Sobic004G258700--Sobic007G161000 Sobic004G258700--Sobic009G040600
Octagon: transcription factors


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