Gene annotation
Transcriptome id Sobic.003G254000.1
Synonym EMB2279, Sb03g030920, EMB88
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt C5XG40
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF327
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G30610 : pentatricopeptide (PPR) repeat-containing protein
RAP-DB (Rice) LOC_Os01g48380.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a038811
Brachypodium KQK09159
Barley HORVU3Hr1G061950.10 , HORVU3Hr1G061950.11 , HORVU3Hr1G061950.12 , HORVU3Hr1G061950.8 , HORVU3Hr1G061950.9 , HORVU3Hr1G061950.2 , HORVU3Hr1G061950.3 , HORVU3Hr1G061950.1 , HORVU3Hr1G061950.6 , HORVU3Hr1G061950.7 , HORVU3Hr1G061950.4 , HORVU3Hr1G061950.5
Wheat TraesCS3B02G304400 , TraesCS3A02G270600 , TraesCS3A02G270600 , TraesCS3A02G270600 , TraesCS3D02G270400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G035900 expressed protein K13156: U11/U12 small nuclear ribonucleoprotein 48 kDa protein
2 Sobic.001G261573 - -
3 Sobic.004G035000 S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed -
4 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
5 Sobic.005G039500 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
6 Sobic.002G064750 - -
7 Sobic.001G274200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
8 Sobic.007G099100 - -
9 Sobic.003G429650 - -
10 Sobic.006G182900 expressed protein -
11 Sobic.010G176550 - -
12 Sobic.006G209850 - -
13 Sobic.009G138800 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
14 Sobic.009G209300 starch synthase, putative, expressed -
15 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
16 Sobic.010G277500 expressed protein -
17 Sobic.002G173000 disease resistance protein RGA2, putative, expressed -
18 Sobic.009G170000 - -
19 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
20 Sobic.004G096600 - -


Gene co-expression network
sample Sobic003G254000 Sobic003G254000 Sobic001G035900 Sobic001G035900 Sobic003G254000--Sobic001G035900 Sobic001G261573 Sobic001G261573 Sobic003G254000--Sobic001G261573 Sobic004G035000 Sobic004G035000 Sobic003G254000--Sobic004G035000 Sobic002G031400 Sobic002G031400 Sobic003G254000--Sobic002G031400 Sobic005G039500 Sobic005G039500 Sobic003G254000--Sobic005G039500 Sobic002G064750 Sobic002G064750 Sobic003G254000--Sobic002G064750 Sobic001G274200 Sobic001G274200 Sobic003G254000--Sobic001G274200 Sobic007G099100 Sobic007G099100 Sobic003G254000--Sobic007G099100 Sobic003G429650 Sobic003G429650 Sobic003G254000--Sobic003G429650 Sobic001G035900--Sobic003G254000 Sobic001G035900--Sobic002G031400 Sobic001G035900--Sobic002G064750 Sobic001G035900--Sobic007G099100 Sobic001G035900--Sobic001G274200 Sobic001G035900--Sobic003G429650 Sobic010G176550 Sobic010G176550 Sobic001G035900--Sobic010G176550 Sobic007G161000 Sobic007G161000 Sobic001G035900--Sobic007G161000 Sobic009G024000 Sobic009G024000 Sobic001G035900--Sobic009G024000 Sobic001G261573--Sobic003G254000 Sobic007G185700 Sobic007G185700 Sobic001G261573--Sobic007G185700 Sobic001G261573--Sobic010G176550 Sobic002G231200 Sobic002G231200 Sobic001G261573--Sobic002G231200 Sobic001G261573--Sobic005G039500 Sobic006G058100 Sobic006G058100 Sobic001G261573--Sobic006G058100 Sobic003G234900 Sobic003G234900 Sobic001G261573--Sobic003G234900 Sobic003G161000 Sobic003G161000 Sobic001G261573--Sobic003G161000 Sobic009G209300 Sobic009G209300 Sobic001G261573--Sobic009G209300 Sobic004G035000--Sobic003G254000 Sobic007G076700 Sobic007G076700 Sobic004G035000--Sobic007G076700 Sobic004G142700 Sobic004G142700 Sobic004G035000--Sobic004G142700 Sobic009G212700 Sobic009G212700 Sobic004G035000--Sobic009G212700 Sobic004G035000--Sobic005G039500 Sobic004G035000--Sobic001G035900 Sobic002G114700 Sobic002G114700 Sobic004G035000--Sobic002G114700 Sobic004G035000--Sobic002G031400 Sobic005G225800 Sobic005G225800 Sobic004G035000--Sobic005G225800 Sobic010G277500 Sobic010G277500 Sobic002G031400--Sobic010G277500 Sobic002G031400--Sobic007G161000 Sobic002G031400--Sobic001G035900 Sobic002G031400--Sobic003G254000 Sobic008G011100 Sobic008G011100 Sobic002G031400--Sobic008G011100 Sobic002G031400--Sobic010G176550 Sobic003G280800 Sobic003G280800 Sobic002G031400--Sobic003G280800 Sobic009G260500 Sobic009G260500 Sobic002G031400--Sobic009G260500 Sobic004G258700 Sobic004G258700 Sobic002G031400--Sobic004G258700 Sobic005G039500--Sobic003G254000 Sobic001G067850 Sobic001G067850 Sobic005G039500--Sobic001G067850 Sobic003G113200 Sobic003G113200 Sobic005G039500--Sobic003G113200 Sobic005G039500--Sobic001G261573 Sobic005G039500--Sobic003G429650 Sobic005G039500--Sobic009G212700 Sobic002G243900 Sobic002G243900 Sobic005G039500--Sobic002G243900 Sobic005G039500--Sobic004G035000 Sobic007G037900 Sobic007G037900 Sobic005G039500--Sobic007G037900 Sobic002G064750--Sobic001G035900 Sobic002G064750--Sobic003G254000 Sobic002G064750--Sobic003G429650 Sobic002G064750--Sobic007G099100 Sobic002G064750--Sobic001G274200 Sobic002G064750--Sobic002G031400 Sobic006G145200 Sobic006G145200 Sobic002G064750--Sobic006G145200 Sobic006G182900 Sobic006G182900 Sobic002G064750--Sobic006G182900 Sobic004G178500 Sobic004G178500 Sobic002G064750--Sobic004G178500 Sobic001G420200 Sobic001G420200 Sobic001G274200--Sobic001G420200 Sobic007G096600 Sobic007G096600 Sobic001G274200--Sobic007G096600 Sobic003G268300 Sobic003G268300 Sobic001G274200--Sobic003G268300 Sobic008G173900 Sobic008G173900 Sobic001G274200--Sobic008G173900 Sobic002G144933 Sobic002G144933 Sobic001G274200--Sobic002G144933 Sobic001G133466 Sobic001G133466 Sobic001G274200--Sobic001G133466 Sobic001G274200--Sobic007G037900 Sobic001G274200--Sobic002G243900 Sobic010G123901 Sobic010G123901 Sobic001G274200--Sobic010G123901 Sobic007G099100--Sobic001G035900 Sobic007G099100--Sobic003G254000 Sobic007G099100--Sobic002G031400 Sobic007G099100--Sobic010G277500 Sobic007G099100--Sobic001G274200 Sobic010G136600 Sobic010G136600 Sobic007G099100--Sobic010G136600 Sobic007G099100--Sobic002G064750 Sobic006G216800 Sobic006G216800 Sobic007G099100--Sobic006G216800 Sobic006G209850 Sobic006G209850 Sobic007G099100--Sobic006G209850 Sobic006G048500 Sobic006G048500 Sobic003G429650--Sobic006G048500 Sobic003G429650--Sobic006G182900 Sobic003G148000 Sobic003G148000 Sobic003G429650--Sobic003G148000 Sobic005G144400 Sobic005G144400 Sobic003G429650--Sobic005G144400 Sobic003G179201 Sobic003G179201 Sobic003G429650--Sobic003G179201 Sobic001G287201 Sobic001G287201 Sobic003G429650--Sobic001G287201 Sobic003G429650--Sobic002G243900 Sobic001G214300 Sobic001G214300 Sobic003G429650--Sobic001G214300 Sobic002G006900 Sobic002G006900 Sobic003G429650--Sobic002G006900
Octagon: transcription factors


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