Gene annotation
Transcriptome id Sobic.005G039500.1
Synonym Sb05g003290, 54CP, SRP54CP, CPSRP54, FFC
Functional annotation signal recognition particle 54 kDa protein, putative, expressed
UniProt A0A1B6PQ07
Pfam PF01656 PF02881 PF02978
Panther DB PTHR11564 PTHR11564:SF19
NCBI CDD -
KEGG Orthology K03106; SRP54, signal recognition particle subunit SRP54
Gene Ontology GO:0006614; SRP-dependent cotranslational protein targeting to membrane GO:0005525GTP binding GO:00083127S RNA binding


Orthologs (automatic annotation)
TAIR AT5G03940 : chloroplast signal recognition particle 54 kDa subunit
RAP-DB (Rice) LOC_Os11g05556.1 : signal recognition particle 54 kDa protein, putative, expressed
MaizeGDB (Corn) Zm00025a053908 , Zm00025a033497
Brachypodium KQJ89412 , KQJ89409
Barley HORVU4Hr1G021960.8 , HORVU4Hr1G021960.9 , HORVU4Hr1G021960.1 , HORVU4Hr1G021960.5 , HORVU4Hr1G021960.7 , HORVU4Hr1G021960.12 , HORVU4Hr1G021960.13 , HORVU4Hr1G021960.10 , HORVU4Hr1G021960.11 , HORVU4Hr1G021960.16 , HORVU4Hr1G021960.14 , HORVU4Hr1G021960.15 , HORVU4Hr1G021960.18 , HORVU4Hr1G021950.5 , HORVU4Hr1G021950.4 , HORVU4Hr1G021950.7 , HORVU4Hr1G021950.11 , HORVU4Hr1G021950.10 , HORVU4Hr1G021950.9 , HORVU4Hr1G021950.8 , HORVU4Hr1G021950.6 , HORVU4Hr1G021950.1 , HORVU4Hr1G021950.3 , HORVU4Hr1G021950.2
Wheat TraesCS4A02G197700 , TraesCS4B02G117900 , TraesCS4B02G117900 , TraesCS4B02G117900 , TraesCS4B02G117800 , TraesCS4D02G115500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G254000 PPR repeat domain containing protein, putative, expressed -
2 Sobic.001G067850 - -
3 Sobic.003G113200 5-nucleotidase domain-containing protein, putative, expressed -
4 Sobic.001G261573 - -
5 Sobic.003G429650 - -
6 Sobic.009G212700 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
7 Sobic.002G243900 - -
8 Sobic.004G035000 S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed -
9 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
10 Sobic.005G225800 white-brown complex homolog protein 11, putative, expressed -
11 Sobic.004G290800 GRAS family transcription factor(PubMedID : 23915383)@scarecrow, putative, expressed -
12 Sobic.009G209300 starch synthase, putative, expressed -
13 Sobic.003G332800 GTPase-activating protein, putative, expressed -
14 Sobic.006G209850 - -
15 Sobic.006G182900 expressed protein -
16 Sobic.005G159000 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed -
17 Sobic.007G178700 - -
18 Sobic.001G274200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
19 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
20 Sobic.009G140500 no apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic005G039500 Sobic005G039500 Sobic003G254000 Sobic003G254000 Sobic005G039500--Sobic003G254000 Sobic001G067850 Sobic001G067850 Sobic005G039500--Sobic001G067850 Sobic003G113200 Sobic003G113200 Sobic005G039500--Sobic003G113200 Sobic001G261573 Sobic001G261573 Sobic005G039500--Sobic001G261573 Sobic003G429650 Sobic003G429650 Sobic005G039500--Sobic003G429650 Sobic009G212700 Sobic009G212700 Sobic005G039500--Sobic009G212700 Sobic002G243900 Sobic002G243900 Sobic005G039500--Sobic002G243900 Sobic004G035000 Sobic004G035000 Sobic005G039500--Sobic004G035000 Sobic007G037900 Sobic007G037900 Sobic005G039500--Sobic007G037900 Sobic001G035900 Sobic001G035900 Sobic003G254000--Sobic001G035900 Sobic003G254000--Sobic001G261573 Sobic003G254000--Sobic004G035000 Sobic002G031400 Sobic002G031400 Sobic003G254000--Sobic002G031400 Sobic003G254000--Sobic005G039500 Sobic002G064750 Sobic002G064750 Sobic003G254000--Sobic002G064750 Sobic001G274200 Sobic001G274200 Sobic003G254000--Sobic001G274200 Sobic007G099100 Sobic007G099100 Sobic003G254000--Sobic007G099100 Sobic003G254000--Sobic003G429650 Sobic001G067850--Sobic002G243900 Sobic007G178700 Sobic007G178700 Sobic001G067850--Sobic007G178700 Sobic001G067850--Sobic001G274200 Sobic009G140500 Sobic009G140500 Sobic001G067850--Sobic009G140500 Sobic001G420200 Sobic001G420200 Sobic001G067850--Sobic001G420200 Sobic005G144400 Sobic005G144400 Sobic001G067850--Sobic005G144400 Sobic007G096600 Sobic007G096600 Sobic001G067850--Sobic007G096600 Sobic001G067850--Sobic007G037900 Sobic006G088580 Sobic006G088580 Sobic001G067850--Sobic006G088580 Sobic006G128900 Sobic006G128900 Sobic003G113200--Sobic006G128900 Sobic001G111900 Sobic001G111900 Sobic003G113200--Sobic001G111900 Sobic006G021250 Sobic006G021250 Sobic003G113200--Sobic006G021250 Sobic003G280800 Sobic003G280800 Sobic003G113200--Sobic003G280800 Sobic003G113200--Sobic005G039500 Sobic003G113200--Sobic007G178700 Sobic006G209850 Sobic006G209850 Sobic003G113200--Sobic006G209850 Sobic008G024600 Sobic008G024600 Sobic003G113200--Sobic008G024600 Sobic005G032800 Sobic005G032800 Sobic003G113200--Sobic005G032800 Sobic001G261573--Sobic003G254000 Sobic007G185700 Sobic007G185700 Sobic001G261573--Sobic007G185700 Sobic010G176550 Sobic010G176550 Sobic001G261573--Sobic010G176550 Sobic002G231200 Sobic002G231200 Sobic001G261573--Sobic002G231200 Sobic001G261573--Sobic005G039500 Sobic006G058100 Sobic006G058100 Sobic001G261573--Sobic006G058100 Sobic003G234900 Sobic003G234900 Sobic001G261573--Sobic003G234900 Sobic003G161000 Sobic003G161000 Sobic001G261573--Sobic003G161000 Sobic009G209300 Sobic009G209300 Sobic001G261573--Sobic009G209300 Sobic006G048500 Sobic006G048500 Sobic003G429650--Sobic006G048500 Sobic006G182900 Sobic006G182900 Sobic003G429650--Sobic006G182900 Sobic003G148000 Sobic003G148000 Sobic003G429650--Sobic003G148000 Sobic003G429650--Sobic005G144400 Sobic003G179201 Sobic003G179201 Sobic003G429650--Sobic003G179201 Sobic001G287201 Sobic001G287201 Sobic003G429650--Sobic001G287201 Sobic003G429650--Sobic002G243900 Sobic001G214300 Sobic001G214300 Sobic003G429650--Sobic001G214300 Sobic002G006900 Sobic002G006900 Sobic003G429650--Sobic002G006900 Sobic009G212700--Sobic005G039500 Sobic009G212700--Sobic004G035000 Sobic005G187200 Sobic005G187200 Sobic009G212700--Sobic005G187200 Sobic007G052900 Sobic007G052900 Sobic009G212700--Sobic007G052900 Sobic004G142700 Sobic004G142700 Sobic009G212700--Sobic004G142700 Sobic009G212700--Sobic007G037900 Sobic007G054000 Sobic007G054000 Sobic009G212700--Sobic007G054000 Sobic001G479500 Sobic001G479500 Sobic009G212700--Sobic001G479500 Sobic009G134500 Sobic009G134500 Sobic009G212700--Sobic009G134500 Sobic002G243900--Sobic007G096600 Sobic004G007100 Sobic004G007100 Sobic002G243900--Sobic004G007100 Sobic002G243900--Sobic005G144400 Sobic002G243900--Sobic003G148000 Sobic002G243900--Sobic006G048500 Sobic002G243900--Sobic007G178700 Sobic003G268300 Sobic003G268300 Sobic002G243900--Sobic003G268300 Sobic002G145101 Sobic002G145101 Sobic002G243900--Sobic002G145101 Sobic003G176500 Sobic003G176500 Sobic002G243900--Sobic003G176500 Sobic004G035000--Sobic003G254000 Sobic007G076700 Sobic007G076700 Sobic004G035000--Sobic007G076700 Sobic004G035000--Sobic004G142700 Sobic004G035000--Sobic009G212700 Sobic004G035000--Sobic005G039500 Sobic004G035000--Sobic001G035900 Sobic002G114700 Sobic002G114700 Sobic004G035000--Sobic002G114700 Sobic004G035000--Sobic002G031400 Sobic005G225800 Sobic005G225800 Sobic004G035000--Sobic005G225800 Sobic007G037900--Sobic003G268300 Sobic007G037900--Sobic001G420200 Sobic006G246900 Sobic006G246900 Sobic007G037900--Sobic006G246900 Sobic002G144933 Sobic002G144933 Sobic007G037900--Sobic002G144933 Sobic007G037900--Sobic001G274200 Sobic009G127900 Sobic009G127900 Sobic007G037900--Sobic009G127900 Sobic001G162300 Sobic001G162300 Sobic007G037900--Sobic001G162300 Sobic004G290800 Sobic004G290800 Sobic007G037900--Sobic004G290800 Sobic002G157000 Sobic002G157000 Sobic007G037900--Sobic002G157000
Octagon: transcription factors


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