Gene annotation
Transcriptome id Sobic.009G212700.3,Sobic.009G212700.2
Synonym RAB75, ATRABG3B, RABG3B, RAB7
Functional annotation ras-related protein, putative, expressed
UniProt A0A1Z5R3J5 , A0A1Z5R493
Pfam PF08477 PF00025
Panther DB PTHR24073 PTHR24073:SF479
NCBI CDD KOG0394; Ras-related GTPase
KEGG Orthology K07897; Ras-related protein Rab-7A
Gene Ontology GO:0005525; GTP binding GO:0007264small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT1G22740 : RAB GTPase homolog G3B
RAP-DB (Rice) LOC_Os05g46000.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a035969 , Zm00025a044373
Brachypodium KQK05183 , KQK05182 , KQK09458
Barley HORVU1Hr1G080330.1 , HORVU1Hr1G080330.3 , HORVU1Hr1G080330.2 , HORVU3Hr1G067530.3 , HORVU3Hr1G067530.6 , HORVU3Hr1G067530.7 , HORVU3Hr1G067530.4 , HORVU3Hr1G067530.5 , HORVU3Hr1G067530.8 , HORVU3Hr1G067530.9 , HORVU3Hr1G067530.10
Wheat TraesCS4A02G343500 , TraesCS1D02G362800 , TraesCS1B02G374600 , TraesCS5D02G529500 , TraesCS1A02G358000 , TraesCS5B02G530800
Populus PNT35649 , PNT35650


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G039500 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
2 Sobic.004G035000 S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed -
3 Sobic.005G187200 expressed protein -
4 Sobic.007G052900 acetyltransferase, GNAT family, putative, expressed -
5 Sobic.004G142700 PPR repeat domain containing protein, putative, expressed -
6 Sobic.007G037900 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed -
7 Sobic.007G054000 powdery mildew resistance protein PM3b, putative, expressed -
8 Sobic.001G479500 dihydroflavonol-4-reductase, putative, expressed K15891: NAD+-dependent farnesol dehydrogenase
9 Sobic.009G134500 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
10 Sobic.003G254000 PPR repeat domain containing protein, putative, expressed -
11 Sobic.003G325200 disease resistance protein, putative, expressed -
12 Sobic.005G225800 white-brown complex homolog protein 11, putative, expressed -
13 Sobic.010G056200 WD-40 repeat family protein, putative, expressed -
14 Sobic.006G180432 - -
15 Sobic.006G246900 expressed protein -
16 Sobic.006G196000 expressed protein -
17 Sobic.005G036600 calmodulin-binding protein, putative, expressed -
18 Sobic.007G076700 coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed K00228: CPOX, coproporphyrinogen III oxidase
19 Sobic.001G132300 NB-ARC domain containing protein, expressed -
20 Sobic.002G209600 CBS domain containing protein, expressed -


Gene co-expression network
sample Sobic009G212700 Sobic009G212700 Sobic005G039500 Sobic005G039500 Sobic009G212700--Sobic005G039500 Sobic004G035000 Sobic004G035000 Sobic009G212700--Sobic004G035000 Sobic005G187200 Sobic005G187200 Sobic009G212700--Sobic005G187200 Sobic007G052900 Sobic007G052900 Sobic009G212700--Sobic007G052900 Sobic004G142700 Sobic004G142700 Sobic009G212700--Sobic004G142700 Sobic007G037900 Sobic007G037900 Sobic009G212700--Sobic007G037900 Sobic007G054000 Sobic007G054000 Sobic009G212700--Sobic007G054000 Sobic001G479500 Sobic001G479500 Sobic009G212700--Sobic001G479500 Sobic009G134500 Sobic009G134500 Sobic009G212700--Sobic009G134500 Sobic003G254000 Sobic003G254000 Sobic005G039500--Sobic003G254000 Sobic001G067850 Sobic001G067850 Sobic005G039500--Sobic001G067850 Sobic003G113200 Sobic003G113200 Sobic005G039500--Sobic003G113200 Sobic001G261573 Sobic001G261573 Sobic005G039500--Sobic001G261573 Sobic003G429650 Sobic003G429650 Sobic005G039500--Sobic003G429650 Sobic005G039500--Sobic009G212700 Sobic002G243900 Sobic002G243900 Sobic005G039500--Sobic002G243900 Sobic005G039500--Sobic004G035000 Sobic005G039500--Sobic007G037900 Sobic004G035000--Sobic003G254000 Sobic007G076700 Sobic007G076700 Sobic004G035000--Sobic007G076700 Sobic004G035000--Sobic004G142700 Sobic004G035000--Sobic009G212700 Sobic004G035000--Sobic005G039500 Sobic001G035900 Sobic001G035900 Sobic004G035000--Sobic001G035900 Sobic002G114700 Sobic002G114700 Sobic004G035000--Sobic002G114700 Sobic002G031400 Sobic002G031400 Sobic004G035000--Sobic002G031400 Sobic005G225800 Sobic005G225800 Sobic004G035000--Sobic005G225800 Sobic010G263800 Sobic010G263800 Sobic005G187200--Sobic010G263800 Sobic004G271900 Sobic004G271900 Sobic005G187200--Sobic004G271900 Sobic005G187200--Sobic001G479500 Sobic004G256600 Sobic004G256600 Sobic005G187200--Sobic004G256600 Sobic007G205800 Sobic007G205800 Sobic005G187200--Sobic007G205800 Sobic007G011400 Sobic007G011400 Sobic005G187200--Sobic007G011400 Sobic002G077200 Sobic002G077200 Sobic005G187200--Sobic002G077200 Sobic005G187200--Sobic009G134500 Sobic001G194900 Sobic001G194900 Sobic005G187200--Sobic001G194900 Sobic010G056200 Sobic010G056200 Sobic007G052900--Sobic010G056200 Sobic004G113800 Sobic004G113800 Sobic007G052900--Sobic004G113800 Sobic002G209600 Sobic002G209600 Sobic007G052900--Sobic002G209600 Sobic010G005600 Sobic010G005600 Sobic007G052900--Sobic010G005600 Sobic004G083700 Sobic004G083700 Sobic007G052900--Sobic004G083700 Sobic007G052900--Sobic007G054000 Sobic010G280100 Sobic010G280100 Sobic007G052900--Sobic010G280100 Sobic006G180432 Sobic006G180432 Sobic007G052900--Sobic006G180432 Sobic009G065100 Sobic009G065100 Sobic007G052900--Sobic009G065100 Sobic004G142700--Sobic004G035000 Sobic004G142700--Sobic007G076700 Sobic004G142700--Sobic009G212700 Sobic004G246800 Sobic004G246800 Sobic004G142700--Sobic004G246800 Sobic004G142700--Sobic003G254000 Sobic001G354501 Sobic001G354501 Sobic004G142700--Sobic001G354501 Sobic010G248600 Sobic010G248600 Sobic004G142700--Sobic010G248600 Sobic006G196000 Sobic006G196000 Sobic004G142700--Sobic006G196000 Sobic004G151900 Sobic004G151900 Sobic004G142700--Sobic004G151900 Sobic003G268300 Sobic003G268300 Sobic007G037900--Sobic003G268300 Sobic001G420200 Sobic001G420200 Sobic007G037900--Sobic001G420200 Sobic006G246900 Sobic006G246900 Sobic007G037900--Sobic006G246900 Sobic002G144933 Sobic002G144933 Sobic007G037900--Sobic002G144933 Sobic001G274200 Sobic001G274200 Sobic007G037900--Sobic001G274200 Sobic009G127900 Sobic009G127900 Sobic007G037900--Sobic009G127900 Sobic001G162300 Sobic001G162300 Sobic007G037900--Sobic001G162300 Sobic004G290800 Sobic004G290800 Sobic007G037900--Sobic004G290800 Sobic002G157000 Sobic002G157000 Sobic007G037900--Sobic002G157000 Sobic007G054000--Sobic007G037900 Sobic007G054000--Sobic001G479500 Sobic009G198900 Sobic009G198900 Sobic007G054000--Sobic009G198900 Sobic007G054000--Sobic006G246900 Sobic006G066650 Sobic006G066650 Sobic007G054000--Sobic006G066650 Sobic007G054000--Sobic005G187200 Sobic001G543800 Sobic001G543800 Sobic007G054000--Sobic001G543800 Sobic007G054000--Sobic001G162300 Sobic006G128900 Sobic006G128900 Sobic007G054000--Sobic006G128900 Sobic003G057800 Sobic003G057800 Sobic001G479500--Sobic003G057800 Sobic005G130200 Sobic005G130200 Sobic001G479500--Sobic005G130200 Sobic010G248200 Sobic010G248200 Sobic001G479500--Sobic010G248200 Sobic008G161401 Sobic008G161401 Sobic001G479500--Sobic008G161401 Sobic009G156000 Sobic009G156000 Sobic001G479500--Sobic009G156000 Sobic001G543900 Sobic001G543900 Sobic001G479500--Sobic001G543900 Sobic001G479500--Sobic005G187200 Sobic002G283300 Sobic002G283300 Sobic001G479500--Sobic002G283300 Sobic004G212800 Sobic004G212800 Sobic001G479500--Sobic004G212800 Sobic009G134500--Sobic006G246900 Sobic006G082600 Sobic006G082600 Sobic009G134500--Sobic006G082600 Sobic009G134500--Sobic009G127900 Sobic009G134500--Sobic001G162300 Sobic009G134500--Sobic002G157000 Sobic008G041700 Sobic008G041700 Sobic009G134500--Sobic008G041700 Sobic009G134500--Sobic005G187200 Sobic009G134500--Sobic007G037900 Sobic007G178700 Sobic007G178700 Sobic009G134500--Sobic007G178700
Octagon: transcription factors


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