Gene annotation
Transcriptome id Sobic.004G142700.1
Synonym Sb04g017800
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1Z5RME7
Pfam PF01535 PF13041 PF12854
Panther DB PTHR24015 PTHR24015:SF471
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09900 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os02g27070.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a020281
Brachypodium KQJ99460
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G035000 S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed -
2 Sobic.007G076700 coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed K00228: CPOX, coproporphyrinogen III oxidase
3 Sobic.009G212700 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
4 Sobic.004G246800 pentatricopeptide, putative, expressed -
5 Sobic.003G254000 PPR repeat domain containing protein, putative, expressed -
6 Sobic.001G354501 - K07877: Ras-related protein Rab-2A
7 Sobic.010G248600 - -
8 Sobic.006G196000 expressed protein -
9 Sobic.004G151900 - -
10 Sobic.005G187200 expressed protein -
11 Sobic.004G244400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
12 Sobic.008G021700 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
13 Sobic.007G054000 powdery mildew resistance protein PM3b, putative, expressed -
14 Sobic.010G270300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@rhodanese-like domain containing protein, putative, expressed -
15 Sobic.001G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf44, putative, expressed K07399: resB, cytochrome c biogenesis protein
16 Sobic.009G251300 endonuclease, putative, expressed -
17 Sobic.001G498200 YT521-B-like family domain containing protein, expressed -
18 Sobic.005G039500 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
19 Sobic.005G022800 GTP binding protein, putative, expressed -
20 Sobic.002G072000 resistance protein, putative, expressed -


Gene co-expression network
sample Sobic004G142700 Sobic004G142700 Sobic004G035000 Sobic004G035000 Sobic004G142700--Sobic004G035000 Sobic007G076700 Sobic007G076700 Sobic004G142700--Sobic007G076700 Sobic009G212700 Sobic009G212700 Sobic004G142700--Sobic009G212700 Sobic004G246800 Sobic004G246800 Sobic004G142700--Sobic004G246800 Sobic003G254000 Sobic003G254000 Sobic004G142700--Sobic003G254000 Sobic001G354501 Sobic001G354501 Sobic004G142700--Sobic001G354501 Sobic010G248600 Sobic010G248600 Sobic004G142700--Sobic010G248600 Sobic006G196000 Sobic006G196000 Sobic004G142700--Sobic006G196000 Sobic004G151900 Sobic004G151900 Sobic004G142700--Sobic004G151900 Sobic004G035000--Sobic003G254000 Sobic004G035000--Sobic007G076700 Sobic004G035000--Sobic004G142700 Sobic004G035000--Sobic009G212700 Sobic005G039500 Sobic005G039500 Sobic004G035000--Sobic005G039500 Sobic001G035900 Sobic001G035900 Sobic004G035000--Sobic001G035900 Sobic002G114700 Sobic002G114700 Sobic004G035000--Sobic002G114700 Sobic002G031400 Sobic002G031400 Sobic004G035000--Sobic002G031400 Sobic005G225800 Sobic005G225800 Sobic004G035000--Sobic005G225800 Sobic007G076700--Sobic004G035000 Sobic001G031300 Sobic001G031300 Sobic007G076700--Sobic001G031300 Sobic002G209600 Sobic002G209600 Sobic007G076700--Sobic002G209600 Sobic003G040000 Sobic003G040000 Sobic007G076700--Sobic003G040000 Sobic009G127400 Sobic009G127400 Sobic007G076700--Sobic009G127400 Sobic007G076700--Sobic004G142700 Sobic003G112700 Sobic003G112700 Sobic007G076700--Sobic003G112700 Sobic007G076700--Sobic002G114700 Sobic007G076700--Sobic001G354501 Sobic009G212700--Sobic005G039500 Sobic009G212700--Sobic004G035000 Sobic005G187200 Sobic005G187200 Sobic009G212700--Sobic005G187200 Sobic007G052900 Sobic007G052900 Sobic009G212700--Sobic007G052900 Sobic009G212700--Sobic004G142700 Sobic007G037900 Sobic007G037900 Sobic009G212700--Sobic007G037900 Sobic007G054000 Sobic007G054000 Sobic009G212700--Sobic007G054000 Sobic001G479500 Sobic001G479500 Sobic009G212700--Sobic001G479500 Sobic009G134500 Sobic009G134500 Sobic009G212700--Sobic009G134500 Sobic001G076200 Sobic001G076200 Sobic004G246800--Sobic001G076200 Sobic004G246800--Sobic002G209600 Sobic008G131700 Sobic008G131700 Sobic004G246800--Sobic008G131700 Sobic008G021700 Sobic008G021700 Sobic004G246800--Sobic008G021700 Sobic005G022800 Sobic005G022800 Sobic004G246800--Sobic005G022800 Sobic004G246800--Sobic004G151900 Sobic001G514100 Sobic001G514100 Sobic004G246800--Sobic001G514100 Sobic005G197300 Sobic005G197300 Sobic004G246800--Sobic005G197300 Sobic004G255500 Sobic004G255500 Sobic004G246800--Sobic004G255500 Sobic003G254000--Sobic001G035900 Sobic001G261573 Sobic001G261573 Sobic003G254000--Sobic001G261573 Sobic003G254000--Sobic004G035000 Sobic003G254000--Sobic002G031400 Sobic003G254000--Sobic005G039500 Sobic002G064750 Sobic002G064750 Sobic003G254000--Sobic002G064750 Sobic001G274200 Sobic001G274200 Sobic003G254000--Sobic001G274200 Sobic007G099100 Sobic007G099100 Sobic003G254000--Sobic007G099100 Sobic003G429650 Sobic003G429650 Sobic003G254000--Sobic003G429650 Sobic001G354501--Sobic002G209600 Sobic001G354501--Sobic003G254000 Sobic001G354501--Sobic007G076700 Sobic001G354501--Sobic007G052900 Sobic003G161000 Sobic003G161000 Sobic001G354501--Sobic003G161000 Sobic001G354501--Sobic005G197300 Sobic001G354501--Sobic003G040000 Sobic010G005600 Sobic010G005600 Sobic001G354501--Sobic010G005600 Sobic001G354501--Sobic002G114700 Sobic001G498200 Sobic001G498200 Sobic010G248600--Sobic001G498200 Sobic010G270300 Sobic010G270300 Sobic010G248600--Sobic010G270300 Sobic009G085400 Sobic009G085400 Sobic010G248600--Sobic009G085400 Sobic003G416100 Sobic003G416100 Sobic010G248600--Sobic003G416100 Sobic005G019600 Sobic005G019600 Sobic010G248600--Sobic005G019600 Sobic007G129401 Sobic007G129401 Sobic010G248600--Sobic007G129401 Sobic001G028900 Sobic001G028900 Sobic010G248600--Sobic001G028900 Sobic004G070200 Sobic004G070200 Sobic010G248600--Sobic004G070200 Sobic010G248600--Sobic004G142700 Sobic009G109450 Sobic009G109450 Sobic006G196000--Sobic009G109450 Sobic009G110366 Sobic009G110366 Sobic006G196000--Sobic009G110366 Sobic005G130100 Sobic005G130100 Sobic006G196000--Sobic005G130100 Sobic009G078500 Sobic009G078500 Sobic006G196000--Sobic009G078500 Sobic003G357500 Sobic003G357500 Sobic006G196000--Sobic003G357500 Sobic006G196000--Sobic001G479500 Sobic009G231300 Sobic009G231300 Sobic006G196000--Sobic009G231300 Sobic009G180200 Sobic009G180200 Sobic006G196000--Sobic009G180200 Sobic009G198900 Sobic009G198900 Sobic006G196000--Sobic009G198900 Sobic004G151900--Sobic008G021700 Sobic009G251300 Sobic009G251300 Sobic004G151900--Sobic009G251300 Sobic001G061600 Sobic001G061600 Sobic004G151900--Sobic001G061600 Sobic007G154800 Sobic007G154800 Sobic004G151900--Sobic007G154800 Sobic004G151900--Sobic004G246800 Sobic007G066050 Sobic007G066050 Sobic004G151900--Sobic007G066050 Sobic003G029300 Sobic003G029300 Sobic004G151900--Sobic003G029300 Sobic001G142400 Sobic001G142400 Sobic004G151900--Sobic001G142400 Sobic009G064766 Sobic009G064766 Sobic004G151900--Sobic009G064766
Octagon: transcription factors


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