Gene annotation
Transcriptome id Sobic.007G076700.1
Synonym Sb07g006160, ATCPO-I, LIN2, HEMF1
Functional annotation coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed
UniProt C5YIV3
Pfam PF01218
Panther DB PTHR10755 PTHR10755:SF7
NCBI CDD -
KEGG Orthology K00228; CPOX, coproporphyrinogen III oxidase
Gene Ontology GO:0006779; porphyrin-containing compound biosynthetic process GO:0004109coproporphyrinogen oxidase activity


Orthologs (automatic annotation)
TAIR AT1G03475 : Coproporphyrinogen III oxidase
RAP-DB (Rice) LOC_Os04g52130.1 : coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ84506 , PNT66890 , PNT66888 , PNT66889
Barley HORVU6Hr1G054420.9 , HORVU6Hr1G054420.8 , HORVU6Hr1G054420.7 , HORVU6Hr1G054420.6 , HORVU6Hr1G054420.2 , HORVU6Hr1G054420.11 , HORVU6Hr1G054420.10
Wheat TraesCS7B02G234200 , TraesCS6D02G196100 , TraesCS6D02G196100 , TraesCS6B02G243500 , TraesCS2A02G426900 , TraesCS6B02G243500 , TraesCS2B02G447300 , TraesCS2D02G425000 , TraesCS6A02G213400 , TraesCS6A02G213400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G035000 S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed -
2 Sobic.001G031300 PPR repeat domain containing protein, putative, expressed -
3 Sobic.002G209600 CBS domain containing protein, expressed -
4 Sobic.003G040000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
5 Sobic.009G127400 PAC, putative, expressed -
6 Sobic.004G142700 PPR repeat domain containing protein, putative, expressed -
7 Sobic.003G112700 transcription regulator, putative, expressed -
8 Sobic.002G114700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.001G354501 - K07877: Ras-related protein Rab-2A
10 Sobic.007G052900 acetyltransferase, GNAT family, putative, expressed -
11 Sobic.009G085400 acyl-activating enzyme 14, putative, expressed -
12 Sobic.003G254000 PPR repeat domain containing protein, putative, expressed -
13 Sobic.004G246800 pentatricopeptide, putative, expressed -
14 Sobic.004G315800 ZOS2-17 - C2H2 zinc finger protein, expressed -
15 Sobic.009G212700 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
16 Sobic.001G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf44, putative, expressed K07399: resB, cytochrome c biogenesis protein
17 Sobic.006G191400 - -
18 Sobic.003G107800 "thylakoid lumenal 17.9 kDa protein, chloroplast"(PubMedID : 26465154)@expressed protein -
19 Sobic.006G214400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
20 Sobic.007G069400 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic007G076700 Sobic007G076700 Sobic004G035000 Sobic004G035000 Sobic007G076700--Sobic004G035000 Sobic001G031300 Sobic001G031300 Sobic007G076700--Sobic001G031300 Sobic002G209600 Sobic002G209600 Sobic007G076700--Sobic002G209600 Sobic003G040000 Sobic003G040000 Sobic007G076700--Sobic003G040000 Sobic009G127400 Sobic009G127400 Sobic007G076700--Sobic009G127400 Sobic004G142700 Sobic004G142700 Sobic007G076700--Sobic004G142700 Sobic003G112700 Sobic003G112700 Sobic007G076700--Sobic003G112700 Sobic002G114700 Sobic002G114700 Sobic007G076700--Sobic002G114700 Sobic001G354501 Sobic001G354501 Sobic007G076700--Sobic001G354501 Sobic003G254000 Sobic003G254000 Sobic004G035000--Sobic003G254000 Sobic004G035000--Sobic007G076700 Sobic004G035000--Sobic004G142700 Sobic009G212700 Sobic009G212700 Sobic004G035000--Sobic009G212700 Sobic005G039500 Sobic005G039500 Sobic004G035000--Sobic005G039500 Sobic001G035900 Sobic001G035900 Sobic004G035000--Sobic001G035900 Sobic004G035000--Sobic002G114700 Sobic002G031400 Sobic002G031400 Sobic004G035000--Sobic002G031400 Sobic005G225800 Sobic005G225800 Sobic004G035000--Sobic005G225800 Sobic010G258300 Sobic010G258300 Sobic001G031300--Sobic010G258300 Sobic001G031300--Sobic007G076700 Sobic007G205600 Sobic007G205600 Sobic001G031300--Sobic007G205600 Sobic001G031300--Sobic004G035000 Sobic009G154600 Sobic009G154600 Sobic001G031300--Sobic009G154600 Sobic003G222300 Sobic003G222300 Sobic001G031300--Sobic003G222300 Sobic001G377000 Sobic001G377000 Sobic001G031300--Sobic001G377000 Sobic001G191200 Sobic001G191200 Sobic001G031300--Sobic001G191200 Sobic007G110200 Sobic007G110200 Sobic001G031300--Sobic007G110200 Sobic004G246800 Sobic004G246800 Sobic002G209600--Sobic004G246800 Sobic007G052900 Sobic007G052900 Sobic002G209600--Sobic007G052900 Sobic006G191400 Sobic006G191400 Sobic002G209600--Sobic006G191400 Sobic001G269300 Sobic001G269300 Sobic002G209600--Sobic001G269300 Sobic009G251300 Sobic009G251300 Sobic002G209600--Sobic009G251300 Sobic005G063700 Sobic005G063700 Sobic002G209600--Sobic005G063700 Sobic008G131700 Sobic008G131700 Sobic002G209600--Sobic008G131700 Sobic002G209600--Sobic007G076700 Sobic002G330400 Sobic002G330400 Sobic002G209600--Sobic002G330400 Sobic006G058100 Sobic006G058100 Sobic003G040000--Sobic006G058100 Sobic002G293600 Sobic002G293600 Sobic003G040000--Sobic002G293600 Sobic003G040000--Sobic009G127400 Sobic003G162800 Sobic003G162800 Sobic003G040000--Sobic003G162800 Sobic003G327200 Sobic003G327200 Sobic003G040000--Sobic003G327200 Sobic003G434700 Sobic003G434700 Sobic003G040000--Sobic003G434700 Sobic003G040000--Sobic007G076700 Sobic003G149300 Sobic003G149300 Sobic003G040000--Sobic003G149300 Sobic001G022500 Sobic001G022500 Sobic003G040000--Sobic001G022500 Sobic009G127400--Sobic003G040000 Sobic007G069400 Sobic007G069400 Sobic009G127400--Sobic007G069400 Sobic001G037500 Sobic001G037500 Sobic009G127400--Sobic001G037500 Sobic009G127400--Sobic007G076700 Sobic009G127400--Sobic003G149300 Sobic009G127400--Sobic002G114700 Sobic005G197300 Sobic005G197300 Sobic009G127400--Sobic005G197300 Sobic009G127400--Sobic003G327200 Sobic001G261573 Sobic001G261573 Sobic009G127400--Sobic001G261573 Sobic004G142700--Sobic004G035000 Sobic004G142700--Sobic007G076700 Sobic004G142700--Sobic009G212700 Sobic004G142700--Sobic004G246800 Sobic004G142700--Sobic003G254000 Sobic004G142700--Sobic001G354501 Sobic010G248600 Sobic010G248600 Sobic004G142700--Sobic010G248600 Sobic006G196000 Sobic006G196000 Sobic004G142700--Sobic006G196000 Sobic004G151900 Sobic004G151900 Sobic004G142700--Sobic004G151900 Sobic003G112700--Sobic007G076700 Sobic003G112700--Sobic002G209600 Sobic003G112700--Sobic007G052900 Sobic003G112700--Sobic002G330400 Sobic003G112700--Sobic006G191400 Sobic003G112700--Sobic004G246800 Sobic003G112700--Sobic009G251300 Sobic005G002600 Sobic005G002600 Sobic003G112700--Sobic005G002600 Sobic003G112700--Sobic004G151900 Sobic008G078900 Sobic008G078900 Sobic002G114700--Sobic008G078900 Sobic003G114100 Sobic003G114100 Sobic002G114700--Sobic003G114100 Sobic006G273400 Sobic006G273400 Sobic002G114700--Sobic006G273400 Sobic001G076200 Sobic001G076200 Sobic002G114700--Sobic001G076200 Sobic003G110700 Sobic003G110700 Sobic002G114700--Sobic003G110700 Sobic002G114700--Sobic007G069400 Sobic006G214400 Sobic006G214400 Sobic002G114700--Sobic006G214400 Sobic002G114700--Sobic004G035000 Sobic002G114700--Sobic007G205600 Sobic001G354501--Sobic002G209600 Sobic001G354501--Sobic003G254000 Sobic001G354501--Sobic007G076700 Sobic001G354501--Sobic007G052900 Sobic003G161000 Sobic003G161000 Sobic001G354501--Sobic003G161000 Sobic001G354501--Sobic005G197300 Sobic001G354501--Sobic003G040000 Sobic010G005600 Sobic010G005600 Sobic001G354501--Sobic010G005600 Sobic001G354501--Sobic002G114700
Octagon: transcription factors


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