Gene annotation
Transcriptome id Sobic.001G031300.1
Synonym PTAC2, Sb01g002930
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1Z5S433
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF659
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G74850 : plastid transcriptionally active 2
RAP-DB (Rice) LOC_Os03g60910.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a049294
Brachypodium KQK12393
Barley HORVU5Hr1G114630.2 , HORVU5Hr1G114630.3 , HORVU5Hr1G114630.1 , HORVU5Hr1G114630.6 , HORVU5Hr1G114630.7 , HORVU5Hr1G114630.4 , HORVU5Hr1G114630.5
Wheat TraesCS5B02G500100 , TraesCS5B02G500100 , TraesCS5A02G486300 , TraesCS5D02G500300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G258300 integral membrane protein, putative, expressed -
2 Sobic.007G076700 coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed K00228: CPOX, coproporphyrinogen III oxidase
3 Sobic.007G205600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00434: L-ascorbate peroxidase
4 Sobic.004G035000 S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed -
5 Sobic.009G154600 glycosyl hydrolases family 17, putative, expressed -
6 Sobic.003G222300 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
7 Sobic.001G377000 auxin-repressed protein, putative, expressed -
8 Sobic.001G191200 a marker of bud dormancy(PubMedID : 16443694)@auxin-repressed protein, putative, expressed -
9 Sobic.007G110200 wound responsive protein, putative, expressed -
10 Sobic.002G114700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.003G406700 expressed protein -
12 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
13 Sobic.001G423100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein K09562: HSPBP1, hsp70-interacting protein
14 Sobic.006G263000 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
15 Sobic.010G052500 ZOS6-01 - C2H2 zinc finger protein, expressed -
16 Sobic.001G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf44, putative, expressed K07399: resB, cytochrome c biogenesis protein
17 Sobic.009G213400 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
18 Sobic.003G170200 OsClp2 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
19 Sobic.006G214400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
20 Sobic.003G222600 similar to DEAD-box ATP-dependent RNA helicase 25(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -


Gene co-expression network
sample Sobic001G031300 Sobic001G031300 Sobic010G258300 Sobic010G258300 Sobic001G031300--Sobic010G258300 Sobic007G076700 Sobic007G076700 Sobic001G031300--Sobic007G076700 Sobic007G205600 Sobic007G205600 Sobic001G031300--Sobic007G205600 Sobic004G035000 Sobic004G035000 Sobic001G031300--Sobic004G035000 Sobic009G154600 Sobic009G154600 Sobic001G031300--Sobic009G154600 Sobic003G222300 Sobic003G222300 Sobic001G031300--Sobic003G222300 Sobic001G377000 Sobic001G377000 Sobic001G031300--Sobic001G377000 Sobic001G191200 Sobic001G191200 Sobic001G031300--Sobic001G191200 Sobic007G110200 Sobic007G110200 Sobic001G031300--Sobic007G110200 Sobic010G258300--Sobic003G222300 Sobic010G258300--Sobic007G110200 Sobic010G258300--Sobic001G031300 Sobic003G222600 Sobic003G222600 Sobic010G258300--Sobic003G222600 Sobic010G258300--Sobic007G205600 Sobic010G258300--Sobic009G154600 Sobic003G170200 Sobic003G170200 Sobic010G258300--Sobic003G170200 Sobic004G011566 Sobic004G011566 Sobic010G258300--Sobic004G011566 Sobic003G030400 Sobic003G030400 Sobic010G258300--Sobic003G030400 Sobic007G076700--Sobic004G035000 Sobic007G076700--Sobic001G031300 Sobic002G209600 Sobic002G209600 Sobic007G076700--Sobic002G209600 Sobic003G040000 Sobic003G040000 Sobic007G076700--Sobic003G040000 Sobic009G127400 Sobic009G127400 Sobic007G076700--Sobic009G127400 Sobic004G142700 Sobic004G142700 Sobic007G076700--Sobic004G142700 Sobic003G112700 Sobic003G112700 Sobic007G076700--Sobic003G112700 Sobic002G114700 Sobic002G114700 Sobic007G076700--Sobic002G114700 Sobic001G354501 Sobic001G354501 Sobic007G076700--Sobic001G354501 Sobic001G388400 Sobic001G388400 Sobic007G205600--Sobic001G388400 Sobic007G205600--Sobic003G170200 Sobic001G537700 Sobic001G537700 Sobic007G205600--Sobic001G537700 Sobic007G205600--Sobic010G258300 Sobic006G220600 Sobic006G220600 Sobic007G205600--Sobic006G220600 Sobic007G205600--Sobic003G222600 Sobic010G211500 Sobic010G211500 Sobic007G205600--Sobic010G211500 Sobic001G450600 Sobic001G450600 Sobic007G205600--Sobic001G450600 Sobic007G205600--Sobic001G031300 Sobic003G254000 Sobic003G254000 Sobic004G035000--Sobic003G254000 Sobic004G035000--Sobic007G076700 Sobic004G035000--Sobic004G142700 Sobic009G212700 Sobic009G212700 Sobic004G035000--Sobic009G212700 Sobic005G039500 Sobic005G039500 Sobic004G035000--Sobic005G039500 Sobic001G035900 Sobic001G035900 Sobic004G035000--Sobic001G035900 Sobic004G035000--Sobic002G114700 Sobic002G031400 Sobic002G031400 Sobic004G035000--Sobic002G031400 Sobic005G225800 Sobic005G225800 Sobic004G035000--Sobic005G225800 Sobic009G154600--Sobic001G191200 Sobic003G107300 Sobic003G107300 Sobic009G154600--Sobic003G107300 Sobic001G423100 Sobic001G423100 Sobic009G154600--Sobic001G423100 Sobic008G148400 Sobic008G148400 Sobic009G154600--Sobic008G148400 Sobic009G154600--Sobic010G258300 Sobic003G406700 Sobic003G406700 Sobic009G154600--Sobic003G406700 Sobic009G154600--Sobic003G222300 Sobic009G154600--Sobic001G031300 Sobic009G213400 Sobic009G213400 Sobic009G154600--Sobic009G213400 Sobic003G222300--Sobic010G258300 Sobic010G245100 Sobic010G245100 Sobic003G222300--Sobic010G245100 Sobic010G052500 Sobic010G052500 Sobic003G222300--Sobic010G052500 Sobic003G222300--Sobic009G213400 Sobic001G093600 Sobic001G093600 Sobic003G222300--Sobic001G093600 Sobic008G177850 Sobic008G177850 Sobic003G222300--Sobic008G177850 Sobic003G222300--Sobic009G154600 Sobic003G222300--Sobic001G031300 Sobic003G222300--Sobic003G107300 Sobic001G377000--Sobic001G191200 Sobic001G377000--Sobic009G213400 Sobic004G096300 Sobic004G096300 Sobic001G377000--Sobic004G096300 Sobic001G377000--Sobic003G406700 Sobic007G148200 Sobic007G148200 Sobic001G377000--Sobic007G148200 Sobic001G293800 Sobic001G293800 Sobic001G377000--Sobic001G293800 Sobic007G071000 Sobic007G071000 Sobic001G377000--Sobic007G071000 Sobic010G172200 Sobic010G172200 Sobic001G377000--Sobic010G172200 Sobic003G264901 Sobic003G264901 Sobic001G377000--Sobic003G264901 Sobic001G191200--Sobic003G406700 Sobic001G078200 Sobic001G078200 Sobic001G191200--Sobic001G078200 Sobic001G191200--Sobic009G154600 Sobic001G191200--Sobic001G377000 Sobic001G191200--Sobic009G213400 Sobic005G085200 Sobic005G085200 Sobic001G191200--Sobic005G085200 Sobic001G191200--Sobic003G107300 Sobic001G191200--Sobic001G423100 Sobic001G225500 Sobic001G225500 Sobic001G191200--Sobic001G225500 Sobic007G110200--Sobic010G258300 Sobic008G073900 Sobic008G073900 Sobic007G110200--Sobic008G073900 Sobic010G000600 Sobic010G000600 Sobic007G110200--Sobic010G000600 Sobic007G110200--Sobic007G205600 Sobic007G110200--Sobic003G222300 Sobic007G110200--Sobic001G031300 Sobic007G110200--Sobic003G222600 Sobic007G110200--Sobic009G154600 Sobic007G110200--Sobic006G220600
Octagon: transcription factors


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