Gene annotation
Transcriptome id Sobic.010G258300.2,Sobic.010G258300.1
Synonym Sb10g029500
Functional annotation integral membrane protein, putative, expressed
UniProt A0A194YLH4 , A0A194YLG0
Pfam PF00892
Panther DB PTHR31218 PTHR31218:SF55
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT3G45870 : nodulin MtN21 /EamA-like transporter family protein
RAP-DB (Rice) LOC_Os06g49500.2,LOC_Os06g49500.3 : integral membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a002711 , Zm00025a041754
Brachypodium KQK17490 , KQK17491 , KQK17489
Barley HORVU7Hr1G095750.3 , HORVU7Hr1G095750.2 , HORVU7Hr1G095750.1 , HORVU7Hr1G095750.7 , HORVU7Hr1G095750.6 , HORVU7Hr1G095750.5 , HORVU7Hr1G095750.4 , HORVU7Hr1G095750.9 , HORVU7Hr1G095750.8 , HORVU7Hr1G095750.12 , HORVU7Hr1G095750.11 , HORVU7Hr1G095750.10 , HORVU6Hr1G050960.2 , HORVU6Hr1G050960.1
Wheat TraesCS7D02G403100 , TraesCS7D02G403100 , TraesCS7A02G409900 , TraesCS7B02G309300 , TraesCS7B02G309300
Populus -


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cDNA sequences
Sobic.010G258300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G222300 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
2 Sobic.007G110200 wound responsive protein, putative, expressed -
3 Sobic.001G031300 PPR repeat domain containing protein, putative, expressed -
4 Sobic.003G222600 similar to DEAD-box ATP-dependent RNA helicase 25(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
5 Sobic.007G205600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00434: L-ascorbate peroxidase
6 Sobic.009G154600 glycosyl hydrolases family 17, putative, expressed -
7 Sobic.003G170200 OsClp2 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
8 Sobic.004G011566 - K03781: katE, CAT, catB, catalase
9 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
10 Sobic.008G148400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein DSP1, putative, expressed -
11 Sobic.005G062900 NBS-LRR disease resistance protein, putative, expressed -
12 Sobic.001G423100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein K09562: HSPBP1, hsp70-interacting protein
13 Sobic.008G177850 - -
14 Sobic.003G107300 light-induced protein 1-like, putative, expressed -
15 Sobic.008G101500 powdery mildew resistance protein PM3b, putative, expressed -
16 Sobic.004G147200 - -
17 Sobic.001G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
18 Sobic.001G384900 hypothetical protein K09250: cellular nucleic acid-binding protein
19 Sobic.010G000600 BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed -
20 Sobic.001G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf44, putative, expressed K07399: resB, cytochrome c biogenesis protein


Gene co-expression network
sample Sobic010G258300 Sobic010G258300 Sobic003G222300 Sobic003G222300 Sobic010G258300--Sobic003G222300 Sobic007G110200 Sobic007G110200 Sobic010G258300--Sobic007G110200 Sobic001G031300 Sobic001G031300 Sobic010G258300--Sobic001G031300 Sobic003G222600 Sobic003G222600 Sobic010G258300--Sobic003G222600 Sobic007G205600 Sobic007G205600 Sobic010G258300--Sobic007G205600 Sobic009G154600 Sobic009G154600 Sobic010G258300--Sobic009G154600 Sobic003G170200 Sobic003G170200 Sobic010G258300--Sobic003G170200 Sobic004G011566 Sobic004G011566 Sobic010G258300--Sobic004G011566 Sobic003G030400 Sobic003G030400 Sobic010G258300--Sobic003G030400 Sobic003G222300--Sobic010G258300 Sobic010G245100 Sobic010G245100 Sobic003G222300--Sobic010G245100 Sobic010G052500 Sobic010G052500 Sobic003G222300--Sobic010G052500 Sobic009G213400 Sobic009G213400 Sobic003G222300--Sobic009G213400 Sobic001G093600 Sobic001G093600 Sobic003G222300--Sobic001G093600 Sobic008G177850 Sobic008G177850 Sobic003G222300--Sobic008G177850 Sobic003G222300--Sobic009G154600 Sobic003G222300--Sobic001G031300 Sobic003G107300 Sobic003G107300 Sobic003G222300--Sobic003G107300 Sobic007G110200--Sobic010G258300 Sobic008G073900 Sobic008G073900 Sobic007G110200--Sobic008G073900 Sobic010G000600 Sobic010G000600 Sobic007G110200--Sobic010G000600 Sobic007G110200--Sobic007G205600 Sobic007G110200--Sobic003G222300 Sobic007G110200--Sobic001G031300 Sobic007G110200--Sobic003G222600 Sobic007G110200--Sobic009G154600 Sobic006G220600 Sobic006G220600 Sobic007G110200--Sobic006G220600 Sobic001G031300--Sobic010G258300 Sobic007G076700 Sobic007G076700 Sobic001G031300--Sobic007G076700 Sobic001G031300--Sobic007G205600 Sobic004G035000 Sobic004G035000 Sobic001G031300--Sobic004G035000 Sobic001G031300--Sobic009G154600 Sobic001G031300--Sobic003G222300 Sobic001G377000 Sobic001G377000 Sobic001G031300--Sobic001G377000 Sobic001G191200 Sobic001G191200 Sobic001G031300--Sobic001G191200 Sobic001G031300--Sobic007G110200 Sobic003G222600--Sobic003G030400 Sobic008G148400 Sobic008G148400 Sobic003G222600--Sobic008G148400 Sobic001G114400 Sobic001G114400 Sobic003G222600--Sobic001G114400 Sobic003G222600--Sobic010G258300 Sobic004G070200 Sobic004G070200 Sobic003G222600--Sobic004G070200 Sobic009G137000 Sobic009G137000 Sobic003G222600--Sobic009G137000 Sobic003G222600--Sobic007G205600 Sobic009G233800 Sobic009G233800 Sobic003G222600--Sobic009G233800 Sobic009G036300 Sobic009G036300 Sobic003G222600--Sobic009G036300 Sobic001G388400 Sobic001G388400 Sobic007G205600--Sobic001G388400 Sobic007G205600--Sobic003G170200 Sobic001G537700 Sobic001G537700 Sobic007G205600--Sobic001G537700 Sobic007G205600--Sobic010G258300 Sobic007G205600--Sobic006G220600 Sobic007G205600--Sobic003G222600 Sobic010G211500 Sobic010G211500 Sobic007G205600--Sobic010G211500 Sobic001G450600 Sobic001G450600 Sobic007G205600--Sobic001G450600 Sobic007G205600--Sobic001G031300 Sobic009G154600--Sobic001G191200 Sobic009G154600--Sobic003G107300 Sobic001G423100 Sobic001G423100 Sobic009G154600--Sobic001G423100 Sobic009G154600--Sobic008G148400 Sobic009G154600--Sobic010G258300 Sobic003G406700 Sobic003G406700 Sobic009G154600--Sobic003G406700 Sobic009G154600--Sobic003G222300 Sobic009G154600--Sobic001G031300 Sobic009G154600--Sobic009G213400 Sobic001G102500 Sobic001G102500 Sobic003G170200--Sobic001G102500 Sobic003G170200--Sobic007G205600 Sobic008G078900 Sobic008G078900 Sobic003G170200--Sobic008G078900 Sobic003G162800 Sobic003G162800 Sobic003G170200--Sobic003G162800 Sobic003G286300 Sobic003G286300 Sobic003G170200--Sobic003G286300 Sobic001G514100 Sobic001G514100 Sobic003G170200--Sobic001G514100 Sobic001G375000 Sobic001G375000 Sobic003G170200--Sobic001G375000 Sobic003G170200--Sobic001G450600 Sobic003G128400 Sobic003G128400 Sobic003G170200--Sobic003G128400 Sobic004G011566--Sobic010G258300 Sobic004G011566--Sobic009G154600 Sobic004G011566--Sobic003G222300 Sobic010G270900 Sobic010G270900 Sobic004G011566--Sobic010G270900 Sobic004G011566--Sobic001G191200 Sobic004G011566--Sobic003G222600 Sobic004G011566--Sobic004G070200 Sobic004G011566--Sobic001G031300 Sobic002G074300 Sobic002G074300 Sobic004G011566--Sobic002G074300 Sobic003G030400--Sobic003G222600 Sobic003G030400--Sobic008G148400 Sobic003G030400--Sobic009G233800 Sobic001G076200 Sobic001G076200 Sobic003G030400--Sobic001G076200 Sobic009G238100 Sobic009G238100 Sobic003G030400--Sobic009G238100 Sobic003G030400--Sobic009G137000 Sobic003G030400--Sobic001G114400 Sobic003G030400--Sobic004G070200 Sobic004G249500 Sobic004G249500 Sobic003G030400--Sobic004G249500
Octagon: transcription factors


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