Gene annotation
Transcriptome id Sobic.008G148400.3,Sobic.008G148400.2
Synonym Sb08g019860
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
DNA-binding protein DSP1, putative, expressed
UniProt A0A1B6PDV1
Pfam PF02577
Panther DB PTHR15160 PTHR15160:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0004518; nuclease activity


Orthologs (automatic annotation)
TAIR AT1G19660 : Wound-responsive family protein
RAP-DB (Rice) LOC_Os01g50622.2 : DNA-binding protein DSP1, putative, expressed
MaizeGDB (Corn) Zm00025a025213
Brachypodium KQK14321 , KQK14320 , PNT74480
Barley HORVU6Hr1G086940.19 , HORVU6Hr1G086940.18 , HORVU6Hr1G086940.17 , HORVU6Hr1G086940.16 , HORVU6Hr1G086940.15 , HORVU6Hr1G086940.14 , HORVU6Hr1G086940.13 , HORVU6Hr1G086940.12 , HORVU6Hr1G086940.11 , HORVU6Hr1G086940.10 , HORVU6Hr1G086940.7 , HORVU6Hr1G086940.6 , HORVU6Hr1G086940.5 , HORVU6Hr1G086940.4 , HORVU6Hr1G086940.3 , HORVU6Hr1G086940.2 , HORVU6Hr1G086940.1 , HORVU6Hr1G086940.9 , HORVU6Hr1G086940.8 , HORVU6Hr1G086940.20 , HORVU6Hr1G086940.21
Wheat TraesCS6A02G367000 , TraesCS6A02G367000 , TraesCS6D02G350000 , TraesCS6B02G402300 , TraesCS6B02G402300
Populus -


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cDNA sequences
Sobic.008G148400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
2 Sobic.001G426400 expressed protein -
3 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
4 Sobic.003G222600 similar to DEAD-box ATP-dependent RNA helicase 25(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
5 Sobic.001G423100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein K09562: HSPBP1, hsp70-interacting protein
6 Sobic.009G154600 glycosyl hydrolases family 17, putative, expressed -
7 Sobic.007G131200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
9 Sobic.006G265400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
10 Sobic.005G145300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBO10 - F-box and other domain containing protein, expressed K12116: flavin-binding kelch repeat F-box protein 1
11 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
12 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -
13 Sobic.010G258300 integral membrane protein, putative, expressed -
14 Sobic.001G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
15 Sobic.010G074100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1270, putative, expressed -
16 Sobic.009G062800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
17 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
18 Sobic.005G169600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
19 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
20 Sobic.001G388400 expressed protein -


Gene co-expression network
sample Sobic008G148400 Sobic008G148400 Sobic009G238100 Sobic009G238100 Sobic008G148400--Sobic009G238100 Sobic001G426400 Sobic001G426400 Sobic008G148400--Sobic001G426400 Sobic003G030400 Sobic003G030400 Sobic008G148400--Sobic003G030400 Sobic003G222600 Sobic003G222600 Sobic008G148400--Sobic003G222600 Sobic001G423100 Sobic001G423100 Sobic008G148400--Sobic001G423100 Sobic009G154600 Sobic009G154600 Sobic008G148400--Sobic009G154600 Sobic007G131200 Sobic007G131200 Sobic008G148400--Sobic007G131200 Sobic009G233800 Sobic009G233800 Sobic008G148400--Sobic009G233800 Sobic006G265400 Sobic006G265400 Sobic008G148400--Sobic006G265400 Sobic009G238100--Sobic008G148400 Sobic009G238100--Sobic001G426400 Sobic009G253000 Sobic009G253000 Sobic009G238100--Sobic009G253000 Sobic001G179100 Sobic001G179100 Sobic009G238100--Sobic001G179100 Sobic005G169600 Sobic005G169600 Sobic009G238100--Sobic005G169600 Sobic009G036300 Sobic009G036300 Sobic009G238100--Sobic009G036300 Sobic009G238100--Sobic003G030400 Sobic007G227600 Sobic007G227600 Sobic009G238100--Sobic007G227600 Sobic002G038300 Sobic002G038300 Sobic009G238100--Sobic002G038300 Sobic001G426400--Sobic006G265400 Sobic001G426400--Sobic008G148400 Sobic001G426400--Sobic009G238100 Sobic009G032100 Sobic009G032100 Sobic001G426400--Sobic009G032100 Sobic004G249500 Sobic004G249500 Sobic001G426400--Sobic004G249500 Sobic003G255100 Sobic003G255100 Sobic001G426400--Sobic003G255100 Sobic001G426400--Sobic003G030400 Sobic007G060900 Sobic007G060900 Sobic001G426400--Sobic007G060900 Sobic001G426400--Sobic007G131200 Sobic003G030400--Sobic003G222600 Sobic003G030400--Sobic008G148400 Sobic003G030400--Sobic009G233800 Sobic001G076200 Sobic001G076200 Sobic003G030400--Sobic001G076200 Sobic003G030400--Sobic009G238100 Sobic009G137000 Sobic009G137000 Sobic003G030400--Sobic009G137000 Sobic001G114400 Sobic001G114400 Sobic003G030400--Sobic001G114400 Sobic004G070200 Sobic004G070200 Sobic003G030400--Sobic004G070200 Sobic003G030400--Sobic004G249500 Sobic003G222600--Sobic003G030400 Sobic003G222600--Sobic008G148400 Sobic003G222600--Sobic001G114400 Sobic010G258300 Sobic010G258300 Sobic003G222600--Sobic010G258300 Sobic003G222600--Sobic004G070200 Sobic003G222600--Sobic009G137000 Sobic007G205600 Sobic007G205600 Sobic003G222600--Sobic007G205600 Sobic003G222600--Sobic009G233800 Sobic003G222600--Sobic009G036300 Sobic001G423100--Sobic009G154600 Sobic001G423100--Sobic008G148400 Sobic001G191200 Sobic001G191200 Sobic001G423100--Sobic001G191200 Sobic003G406700 Sobic003G406700 Sobic001G423100--Sobic003G406700 Sobic001G078200 Sobic001G078200 Sobic001G423100--Sobic001G078200 Sobic001G031300 Sobic001G031300 Sobic001G423100--Sobic001G031300 Sobic006G279800 Sobic006G279800 Sobic001G423100--Sobic006G279800 Sobic001G423100--Sobic010G258300 Sobic001G423100--Sobic003G030400 Sobic009G154600--Sobic001G191200 Sobic003G107300 Sobic003G107300 Sobic009G154600--Sobic003G107300 Sobic009G154600--Sobic001G423100 Sobic009G154600--Sobic008G148400 Sobic009G154600--Sobic010G258300 Sobic009G154600--Sobic003G406700 Sobic003G222300 Sobic003G222300 Sobic009G154600--Sobic003G222300 Sobic009G154600--Sobic001G031300 Sobic009G213400 Sobic009G213400 Sobic009G154600--Sobic009G213400 Sobic010G143400 Sobic010G143400 Sobic007G131200--Sobic010G143400 Sobic007G131200--Sobic008G148400 Sobic007G131200--Sobic004G070200 Sobic007G131200--Sobic003G030400 Sobic009G197000 Sobic009G197000 Sobic007G131200--Sobic009G197000 Sobic007G131200--Sobic003G222600 Sobic007G131200--Sobic006G265400 Sobic007G131200--Sobic001G426400 Sobic007G131200--Sobic003G406700 Sobic010G074200 Sobic010G074200 Sobic009G233800--Sobic010G074200 Sobic006G204100 Sobic006G204100 Sobic009G233800--Sobic006G204100 Sobic001G388400 Sobic001G388400 Sobic009G233800--Sobic001G388400 Sobic004G055600 Sobic004G055600 Sobic009G233800--Sobic004G055600 Sobic009G233800--Sobic003G030400 Sobic010G074100 Sobic010G074100 Sobic009G233800--Sobic010G074100 Sobic009G233800--Sobic009G137000 Sobic009G233800--Sobic001G076200 Sobic010G028000 Sobic010G028000 Sobic009G233800--Sobic010G028000 Sobic006G265400--Sobic001G426400 Sobic006G265400--Sobic008G148400 Sobic006G265400--Sobic009G238100 Sobic006G265400--Sobic007G131200 Sobic006G265400--Sobic007G060900 Sobic001G141300 Sobic001G141300 Sobic006G265400--Sobic001G141300 Sobic006G265400--Sobic009G197000 Sobic001G255400 Sobic001G255400 Sobic006G265400--Sobic001G255400 Sobic006G265400--Sobic010G143400
Octagon: transcription factors


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