Gene annotation
Transcriptome id Sobic.010G074100.1
Synonym EMB1270, Sb10g006490
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
EMB1270, putative, expressed
UniProt A0A194YHV0
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF556
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G18110 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os06g09880.1 : EMB1270, putative, expressed
MaizeGDB (Corn) Zm00025a049667
Brachypodium KQK19136
Barley HORVU7Hr1G033940.10 , HORVU7Hr1G033940.11 , HORVU7Hr1G033940.12 , HORVU7Hr1G033940.13 , HORVU7Hr1G033940.14 , HORVU7Hr1G033940.2 , HORVU7Hr1G033940.3 , HORVU7Hr1G033940.1 , HORVU7Hr1G033940.6 , HORVU7Hr1G033940.7 , HORVU7Hr1G033940.4 , HORVU7Hr1G033940.5 , HORVU7Hr1G033940.8 , HORVU7Hr1G033940.9
Wheat TraesCS7B02G066600 , TraesCS7A02G315916 , TraesCS7A02G161500 , TraesCS7D02G162800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
2 Sobic.010G074200 - -
3 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
4 Sobic.001G388400 expressed protein -
5 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
6 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
7 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
8 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -
9 Sobic.009G062800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
10 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
11 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
12 Sobic.003G404400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized RNA methyltransferase pc1998, putative, expressed -
13 Sobic.002G250100 dehydrogenase, putative, expressed -
14 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
15 Sobic.002G163700 expressed protein -
16 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
17 Sobic.003G356100 CRR2, putative, expressed -
18 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
19 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
20 Sobic.005G028900 cytochrome c-type biogenesis protein dbsD-like, putative, expressed -


Gene co-expression network
sample Sobic010G074100 Sobic010G074100 Sobic007G227600 Sobic007G227600 Sobic010G074100--Sobic007G227600 Sobic010G074200 Sobic010G074200 Sobic010G074100--Sobic010G074200 Sobic009G036300 Sobic009G036300 Sobic010G074100--Sobic009G036300 Sobic001G388400 Sobic001G388400 Sobic010G074100--Sobic001G388400 Sobic010G028000 Sobic010G028000 Sobic010G074100--Sobic010G028000 Sobic009G233800 Sobic009G233800 Sobic010G074100--Sobic009G233800 Sobic010G211500 Sobic010G211500 Sobic010G074100--Sobic010G211500 Sobic009G253000 Sobic009G253000 Sobic010G074100--Sobic009G253000 Sobic009G062800 Sobic009G062800 Sobic010G074100--Sobic009G062800 Sobic007G227600--Sobic010G074100 Sobic007G227600--Sobic009G036300 Sobic007G227600--Sobic001G388400 Sobic009G234200 Sobic009G234200 Sobic007G227600--Sobic009G234200 Sobic007G227600--Sobic010G028000 Sobic007G227600--Sobic010G074200 Sobic007G227600--Sobic009G253000 Sobic007G227600--Sobic010G211500 Sobic002G163700 Sobic002G163700 Sobic007G227600--Sobic002G163700 Sobic006G204100 Sobic006G204100 Sobic010G074200--Sobic006G204100 Sobic010G074200--Sobic010G074100 Sobic010G074200--Sobic001G388400 Sobic010G074200--Sobic009G233800 Sobic010G074200--Sobic009G036300 Sobic010G074200--Sobic010G028000 Sobic010G074200--Sobic007G227600 Sobic010G074200--Sobic009G234200 Sobic003G330100 Sobic003G330100 Sobic010G074200--Sobic003G330100 Sobic009G036300--Sobic007G227600 Sobic009G036300--Sobic001G388400 Sobic009G036300--Sobic010G074200 Sobic009G036300--Sobic010G028000 Sobic009G036300--Sobic010G074100 Sobic009G036300--Sobic010G211500 Sobic009G036300--Sobic009G234200 Sobic009G036300--Sobic006G204100 Sobic009G036300--Sobic002G163700 Sobic001G388400--Sobic009G234200 Sobic001G388400--Sobic010G028000 Sobic001G388400--Sobic009G036300 Sobic001G388400--Sobic010G074200 Sobic001G388400--Sobic007G227600 Sobic001G388400--Sobic006G204100 Sobic001G388400--Sobic009G253000 Sobic001G388400--Sobic009G233800 Sobic002G250100 Sobic002G250100 Sobic001G388400--Sobic002G250100 Sobic010G028000--Sobic001G388400 Sobic010G028000--Sobic009G234200 Sobic010G028000--Sobic006G204100 Sobic010G028000--Sobic010G074200 Sobic010G028000--Sobic009G036300 Sobic010G028000--Sobic007G227600 Sobic010G028000--Sobic003G330100 Sobic003G245800 Sobic003G245800 Sobic010G028000--Sobic003G245800 Sobic010G183400 Sobic010G183400 Sobic010G028000--Sobic010G183400 Sobic009G233800--Sobic010G074200 Sobic009G233800--Sobic006G204100 Sobic009G233800--Sobic001G388400 Sobic004G055600 Sobic004G055600 Sobic009G233800--Sobic004G055600 Sobic003G030400 Sobic003G030400 Sobic009G233800--Sobic003G030400 Sobic009G233800--Sobic010G074100 Sobic009G137000 Sobic009G137000 Sobic009G233800--Sobic009G137000 Sobic001G076200 Sobic001G076200 Sobic009G233800--Sobic001G076200 Sobic009G233800--Sobic010G028000 Sobic010G211500--Sobic007G227600 Sobic010G211500--Sobic009G036300 Sobic001G207200 Sobic001G207200 Sobic010G211500--Sobic001G207200 Sobic009G052700 Sobic009G052700 Sobic010G211500--Sobic009G052700 Sobic003G084500 Sobic003G084500 Sobic010G211500--Sobic003G084500 Sobic001G450600 Sobic001G450600 Sobic010G211500--Sobic001G450600 Sobic003G334100 Sobic003G334100 Sobic010G211500--Sobic003G334100 Sobic010G211500--Sobic010G183400 Sobic010G211500--Sobic010G074100 Sobic009G253000--Sobic001G388400 Sobic009G253000--Sobic007G227600 Sobic009G238100 Sobic009G238100 Sobic009G253000--Sobic009G238100 Sobic009G253000--Sobic010G074100 Sobic009G253000--Sobic009G036300 Sobic009G253000--Sobic010G028000 Sobic009G253000--Sobic009G233800 Sobic009G253000--Sobic010G074200 Sobic009G253000--Sobic006G204100 Sobic009G062800--Sobic010G074100 Sobic009G062800--Sobic010G074200 Sobic009G062800--Sobic009G036300 Sobic009G062800--Sobic007G227600 Sobic008G148400 Sobic008G148400 Sobic009G062800--Sobic008G148400 Sobic009G062800--Sobic009G238100 Sobic009G062800--Sobic009G253000 Sobic009G062800--Sobic010G028000 Sobic005G145300 Sobic005G145300 Sobic009G062800--Sobic005G145300
Octagon: transcription factors


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