Gene annotation
Transcriptome id Sobic.010G028000.2,Sobic.010G028000.1
Synonym Sb10g002540
Functional annotation ribosome-binding factor A, chloroplast precursor, putative, expressed
UniProt C5Z3G4
Pfam PF02033
Panther DB PTHR33515
NCBI CDD -
KEGG Orthology K02834; ribosome-binding factor A
Gene Ontology GO:0006364; rRNA processing


Orthologs (automatic annotation)
TAIR AT4G34730 : ribosome-binding factor A family protein
RAP-DB (Rice) LOC_Os06g04610.1 : ribosome-binding factor A, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a050105
Brachypodium KQK19949 , KQK19950 , KQK19948 , KQK19947 , KQK19946
Barley HORVU7Hr1G017880.1 , HORVU7Hr1G017880.3 , HORVU7Hr1G017880.2 , HORVU7Hr1G017880.5 , HORVU7Hr1G017880.4
Wheat TraesCS7D02G073000 , TraesCS4D02G264800 , TraesCS4A02G376000 , TraesCS2D02G053800 , TraesCS7A02G077400
Populus -


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cDNA sequences
Sobic.010G028000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G388400 expressed protein -
2 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
3 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
4 Sobic.010G074200 - -
5 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
6 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
7 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
8 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
9 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
10 Sobic.010G074100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1270, putative, expressed -
11 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
12 Sobic.002G250100 dehydrogenase, putative, expressed -
13 Sobic.010G211500 DNA-directed RNA polymerase 3A, chloroplast precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
14 Sobic.002G345200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.008G072300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
16 Sobic.002G386400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
17 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -
18 Sobic.006G197700 Unnamed(PubMedID : 24676859)@RNA recognition motif containing protein, putative, expressed -
19 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
20 Sobic.002G163700 expressed protein -


Gene co-expression network
sample Sobic010G028000 Sobic010G028000 Sobic001G388400 Sobic001G388400 Sobic010G028000--Sobic001G388400 Sobic009G234200 Sobic009G234200 Sobic010G028000--Sobic009G234200 Sobic006G204100 Sobic006G204100 Sobic010G028000--Sobic006G204100 Sobic010G074200 Sobic010G074200 Sobic010G028000--Sobic010G074200 Sobic009G036300 Sobic009G036300 Sobic010G028000--Sobic009G036300 Sobic007G227600 Sobic007G227600 Sobic010G028000--Sobic007G227600 Sobic003G330100 Sobic003G330100 Sobic010G028000--Sobic003G330100 Sobic003G245800 Sobic003G245800 Sobic010G028000--Sobic003G245800 Sobic010G183400 Sobic010G183400 Sobic010G028000--Sobic010G183400 Sobic001G388400--Sobic009G234200 Sobic001G388400--Sobic010G028000 Sobic001G388400--Sobic009G036300 Sobic001G388400--Sobic010G074200 Sobic001G388400--Sobic007G227600 Sobic001G388400--Sobic006G204100 Sobic009G253000 Sobic009G253000 Sobic001G388400--Sobic009G253000 Sobic009G233800 Sobic009G233800 Sobic001G388400--Sobic009G233800 Sobic002G250100 Sobic002G250100 Sobic001G388400--Sobic002G250100 Sobic009G234200--Sobic001G388400 Sobic009G234200--Sobic010G028000 Sobic009G234200--Sobic010G183400 Sobic009G234200--Sobic003G330100 Sobic004G250200 Sobic004G250200 Sobic009G234200--Sobic004G250200 Sobic009G234200--Sobic006G204100 Sobic009G234200--Sobic003G245800 Sobic006G111600 Sobic006G111600 Sobic009G234200--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic009G234200--Sobic004G179200 Sobic006G204100--Sobic010G074200 Sobic008G072300 Sobic008G072300 Sobic006G204100--Sobic008G072300 Sobic006G204100--Sobic001G388400 Sobic006G204100--Sobic009G234200 Sobic006G204100--Sobic003G330100 Sobic006G204100--Sobic009G233800 Sobic006G204100--Sobic010G028000 Sobic006G204100--Sobic007G227600 Sobic006G204100--Sobic004G250200 Sobic010G074200--Sobic006G204100 Sobic010G074100 Sobic010G074100 Sobic010G074200--Sobic010G074100 Sobic010G074200--Sobic001G388400 Sobic010G074200--Sobic009G233800 Sobic010G074200--Sobic009G036300 Sobic010G074200--Sobic010G028000 Sobic010G074200--Sobic007G227600 Sobic010G074200--Sobic009G234200 Sobic010G074200--Sobic003G330100 Sobic009G036300--Sobic007G227600 Sobic009G036300--Sobic001G388400 Sobic009G036300--Sobic010G074200 Sobic009G036300--Sobic010G028000 Sobic009G036300--Sobic010G074100 Sobic010G211500 Sobic010G211500 Sobic009G036300--Sobic010G211500 Sobic009G036300--Sobic009G234200 Sobic009G036300--Sobic006G204100 Sobic002G163700 Sobic002G163700 Sobic009G036300--Sobic002G163700 Sobic007G227600--Sobic010G074100 Sobic007G227600--Sobic009G036300 Sobic007G227600--Sobic001G388400 Sobic007G227600--Sobic009G234200 Sobic007G227600--Sobic010G028000 Sobic007G227600--Sobic010G074200 Sobic007G227600--Sobic009G253000 Sobic007G227600--Sobic010G211500 Sobic007G227600--Sobic002G163700 Sobic003G330100--Sobic006G111600 Sobic002G131700 Sobic002G131700 Sobic003G330100--Sobic002G131700 Sobic003G330100--Sobic004G250200 Sobic003G330100--Sobic009G234200 Sobic003G221700 Sobic003G221700 Sobic003G330100--Sobic003G221700 Sobic003G330100--Sobic008G072300 Sobic003G330100--Sobic006G204100 Sobic003G330100--Sobic010G183400 Sobic002G345200 Sobic002G345200 Sobic003G330100--Sobic002G345200 Sobic006G197700 Sobic006G197700 Sobic003G245800--Sobic006G197700 Sobic003G245800--Sobic002G345200 Sobic003G245800--Sobic004G250200 Sobic003G245800--Sobic010G183400 Sobic003G439600 Sobic003G439600 Sobic003G245800--Sobic003G439600 Sobic003G245800--Sobic002G250100 Sobic003G245800--Sobic003G221700 Sobic003G245800--Sobic009G234200 Sobic003G245800--Sobic003G330100 Sobic010G183400--Sobic009G234200 Sobic010G183400--Sobic004G250200 Sobic004G333400 Sobic004G333400 Sobic010G183400--Sobic004G333400 Sobic010G183400--Sobic003G245800 Sobic003G334100 Sobic003G334100 Sobic010G183400--Sobic003G334100 Sobic010G183400--Sobic003G330100 Sobic001G450600 Sobic001G450600 Sobic010G183400--Sobic001G450600 Sobic010G183400--Sobic003G439600 Sobic005G028900 Sobic005G028900 Sobic010G183400--Sobic005G028900
Octagon: transcription factors


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