Gene annotation
Transcriptome id Sobic.002G345200.1
Synonym Sb02g036836
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1B6QF10
Pfam PF02341
Panther DB PTHR33791 PTHR33791:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G19855 : Chaperonin-like RbcX protein
RAP-DB (Rice) LOC_Os07g38230.1 : expressed protein
MaizeGDB (Corn) Zm00025a048442
Brachypodium -
Barley -
Wheat TraesCS5B02G468800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G345200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G245800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoglycerate mutase, putative, expressed -
2 Sobic.006G197700 Unnamed(PubMedID : 24676859)@RNA recognition motif containing protein, putative, expressed -
3 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
4 Sobic.004G250200 ORMM1(PubMedID : 24676859)@RNA recognition motif family protein, expressed -
5 Sobic.003G221700 psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed -
6 Sobic.008G072300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.006G111600 cell division protease ftsH homolog 4, putative, expressed -
8 Sobic.002G250100 dehydrogenase, putative, expressed -
9 Sobic.010G028000 ribosome-binding factor A, chloroplast precursor, putative, expressed K02834: ribosome-binding factor A
10 Sobic.001G388400 expressed protein -
11 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
12 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
13 Sobic.010G074200 - -
14 Sobic.007G132500 F-box domain containing protein, expressed -
15 Sobic.001G006000 PPR repeat domain containing protein, putative, expressed -
16 Sobic.010G183400 down-regulated TF in developmental senescence(PubMedID : 27586543)@homeobox domain containing protein, expressed -
17 Sobic.009G028400 expressed protein -
18 Sobic.002G386400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
19 Sobic.004G314800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G345200 Sobic002G345200 Sobic003G245800 Sobic003G245800 Sobic002G345200--Sobic003G245800 Sobic006G197700 Sobic006G197700 Sobic002G345200--Sobic006G197700 Sobic003G330100 Sobic003G330100 Sobic002G345200--Sobic003G330100 Sobic004G250200 Sobic004G250200 Sobic002G345200--Sobic004G250200 Sobic003G221700 Sobic003G221700 Sobic002G345200--Sobic003G221700 Sobic008G072300 Sobic008G072300 Sobic002G345200--Sobic008G072300 Sobic006G111600 Sobic006G111600 Sobic002G345200--Sobic006G111600 Sobic002G250100 Sobic002G250100 Sobic002G345200--Sobic002G250100 Sobic010G028000 Sobic010G028000 Sobic002G345200--Sobic010G028000 Sobic003G245800--Sobic006G197700 Sobic003G245800--Sobic002G345200 Sobic003G245800--Sobic004G250200 Sobic010G183400 Sobic010G183400 Sobic003G245800--Sobic010G183400 Sobic003G439600 Sobic003G439600 Sobic003G245800--Sobic003G439600 Sobic003G245800--Sobic002G250100 Sobic003G245800--Sobic003G221700 Sobic009G234200 Sobic009G234200 Sobic003G245800--Sobic009G234200 Sobic003G245800--Sobic003G330100 Sobic006G197700--Sobic003G245800 Sobic006G197700--Sobic002G345200 Sobic006G197700--Sobic006G111600 Sobic007G132500 Sobic007G132500 Sobic006G197700--Sobic007G132500 Sobic006G197700--Sobic003G439600 Sobic006G197700--Sobic003G330100 Sobic006G197700--Sobic003G221700 Sobic002G386400 Sobic002G386400 Sobic006G197700--Sobic002G386400 Sobic002G163700 Sobic002G163700 Sobic006G197700--Sobic002G163700 Sobic003G330100--Sobic006G111600 Sobic002G131700 Sobic002G131700 Sobic003G330100--Sobic002G131700 Sobic003G330100--Sobic004G250200 Sobic003G330100--Sobic009G234200 Sobic003G330100--Sobic003G221700 Sobic003G330100--Sobic008G072300 Sobic006G204100 Sobic006G204100 Sobic003G330100--Sobic006G204100 Sobic003G330100--Sobic010G183400 Sobic003G330100--Sobic002G345200 Sobic004G250200--Sobic003G330100 Sobic004G250200--Sobic010G183400 Sobic004G250200--Sobic003G245800 Sobic004G250200--Sobic009G234200 Sobic004G250200--Sobic006G111600 Sobic004G250200--Sobic002G345200 Sobic005G028900 Sobic005G028900 Sobic004G250200--Sobic005G028900 Sobic004G250200--Sobic003G221700 Sobic003G444500 Sobic003G444500 Sobic004G250200--Sobic003G444500 Sobic001G333000 Sobic001G333000 Sobic003G221700--Sobic001G333000 Sobic003G221700--Sobic006G111600 Sobic004G179200 Sobic004G179200 Sobic003G221700--Sobic004G179200 Sobic003G221700--Sobic003G330100 Sobic002G251400 Sobic002G251400 Sobic003G221700--Sobic002G251400 Sobic003G221700--Sobic002G131700 Sobic003G221700--Sobic003G245800 Sobic003G221700--Sobic009G234200 Sobic003G221700--Sobic008G072300 Sobic008G072300--Sobic006G204100 Sobic008G072300--Sobic003G330100 Sobic008G072300--Sobic003G221700 Sobic008G072300--Sobic009G234200 Sobic008G072300--Sobic006G111600 Sobic008G072300--Sobic002G345200 Sobic007G034500 Sobic007G034500 Sobic008G072300--Sobic007G034500 Sobic010G074200 Sobic010G074200 Sobic008G072300--Sobic010G074200 Sobic008G072300--Sobic004G250200 Sobic006G111600--Sobic003G330100 Sobic006G111600--Sobic003G221700 Sobic006G111600--Sobic002G131700 Sobic006G111600--Sobic004G179200 Sobic006G111600--Sobic009G234200 Sobic006G111600--Sobic004G250200 Sobic006G111600--Sobic010G183400 Sobic006G111600--Sobic006G197700 Sobic009G028400 Sobic009G028400 Sobic006G111600--Sobic009G028400 Sobic002G250100--Sobic003G245800 Sobic001G388400 Sobic001G388400 Sobic002G250100--Sobic001G388400 Sobic002G250100--Sobic002G163700 Sobic002G250100--Sobic010G028000 Sobic002G250100--Sobic009G234200 Sobic002G250100--Sobic002G345200 Sobic007G227600 Sobic007G227600 Sobic002G250100--Sobic007G227600 Sobic002G250100--Sobic003G439600 Sobic002G250100--Sobic006G197700 Sobic010G028000--Sobic001G388400 Sobic010G028000--Sobic009G234200 Sobic010G028000--Sobic006G204100 Sobic010G028000--Sobic010G074200 Sobic009G036300 Sobic009G036300 Sobic010G028000--Sobic009G036300 Sobic010G028000--Sobic007G227600 Sobic010G028000--Sobic003G330100 Sobic010G028000--Sobic003G245800 Sobic010G028000--Sobic010G183400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.